MolNFT v2 · #170694 · protein
Tubulin-RB3_SLD-TTL in complex with compound 5l
6X1E: “Tubulin-RB3_SLD-TTL in complex with compound 5l”. X-ray diffraction at 2.9, 6 ligands (GTP, Y5L, GDP). MolNFT v2 #170694 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6X1E
- Type
- protein
- Length
- 2,173 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.9
- Source
- Gallus gallus; Rattus norvegicus; Sus scrofa
- UniProt
- Q2XVP4, A0A287AGU7, P63043, E1BQ43
- Ligands
- GTP, Y5L, GDP, ACP, MG, CA
Structure
x-ray diffraction · resolution 2.9 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 437 | — | Q2XVP4 |
| B | — | protein | 427 | — | A0A287AGU7 |
| C | — | protein | 440 | — | Q2XVP4 |
| D | — | protein | 421 | — | A0A287AGU7 |
| E | — | protein | 121 | — | P63043 |
| F | — | protein | 327 | — | E1BQ43 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · 3 copies · chains A, B, C, D
- Y5L · 4-(2-chloro-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl)-7-methoxy-3,4-dihydroquinoxalin-2(1H)-one · ligand · 2 copies · chains A, B, C, D
- GDP · Guanosine-5'-diphosphate · ligand · chains B
- ACP · Phosphomethylphosphonic acid adenylate ester · ligand · chains F
- MG · Magnesium ion · metal · 5 copies · chains A, B, C, D, F
- CA · Calcium ion · metal · 2 copies · chains A, C
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6X1E · Tubulin-RB3_SLD-ttl in complex with compound 5L · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2XVP4
- Every structure of UniProt A0A287AGU7
- Every structure of UniProt P63043
- Every structure of UniProt E1BQ43
- Elsewhere: RCSB PDB 6X1E · PDBe 6X1E · UniProt Q2XVP4 · UniProt A0A287AGU7 · UniProt P63043 · UniProt E1BQ43
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