MolNFT v2 · #169886 · protein + RNA

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)

6WDB: “Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)”. Electron microscopy at 4.0, 1 ligand (FME). MolNFT v2 #169886 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6WDB
Type: protein + RNA
Length: 10,830 residues
Chains: 58
Method: electron microscopy
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 4.0
Source: Escherichia coli; SYNTHETIC CONSTRUCT
UniProt: P60422, P60438, P60723, P62399, P0AG55, P0A7R1, P0A7J3, P0A7J7, P0AA10, P0ADY3, P02413, P0ADY7, P0AG44, P0C018, P0A7K6, P0A7L3, P0AG48, P61175, P0ADZ0, P60624, P68919, P0A7L8, P0A7M2, P0A7M6, P0AG51, P0A7N4, P0A7N9, P0A7P5, P0A7Q1, P0A7Q6, P0A7V0, P0A7V3, P0A7V8, P0A7W1, P02358, P02359, P0A7W7, P0A7X3, P0A7R5, P0A7R9, P0A7S3, P0A7S9, P0AG59, P0ADZ4, P0A7T3, P0AG63, P0A7T7, P0A7U3, P0A7U7, P68679, P0A7L0
Ligands: FME

Structure

electron microscopy · resolution 4.0 · 57 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
b	—	protein	271	—	P60422
c	—	protein	209	—	P60438
d	—	protein	201	—	P60723
e	—	protein	177	—	P62399
f	—	protein	176	—	P0AG55
g	—	protein	149	—	P0A7R1
h	—	protein	131	—	P0A7J3
i	—	protein	141	—	P0A7J7
j	—	protein	142	—	P0AA10
k	—	protein	122	—	P0ADY3
l	—	protein	143	—	P02413
m	—	protein	136	—	P0ADY7
n	—	protein	120	—	P0AG44
o	—	protein	116	—	P0C018
p	—	protein	114	—	P0A7K6
q	—	protein	117	—	P0A7L3
r	—	protein	103	—	P0AG48
s	—	protein	110	—	P61175
t	—	protein	93	—	P0ADZ0
u	—	protein	102	—	P60624
v	—	protein	94	—	P68919
w	—	protein	75	—	P0A7L8
x	—	protein	77	—	P0A7M2
y	—	protein	63	—	P0A7M6
z	—	protein	58	—	P0AG51
B	—	protein	56	—	P0A7N4
C	—	protein	50	—	P0A7N9
D	—	protein	46	—	P0A7P5
E	—	protein	64	—	P0A7Q1
F	—	protein	38	—	P0A7Q6
G	—	protein	225	—	P0A7V0
H	—	protein	206	—	P0A7V3
I	—	protein	205	—	P0A7V8
J	—	protein	157	—	P0A7W1
K	—	protein	100	—	P02358
L	—	protein	151	—	P02359
M	—	protein	129	—	P0A7W7
N	—	protein	127	—	P0A7X3
O	—	protein	98	—	P0A7R5
P	—	protein	116	—	P0A7R9
Q	—	protein	123	—	P0A7S3
R	—	protein	114	—	P0A7S9
S	—	protein	100	—	P0AG59
T	—	protein	88	—	P0ADZ4
U	—	protein	82	—	P0A7T3
V	—	protein	80	—	P0AG63
W	—	protein	65	—	P0A7T7
X	—	protein	79	—	P0A7U3
Y	—	protein	85	—	P0A7U7
Z	—	protein	65	—	P68679
a	—	protein	134	—	P0A7L0
3	—	rna	1539	—	—
1	—	rna	2903	—	—
2	—	rna	120	—	—
5, 6	—	rna	77	—	—
4	—	rna	18	—	—
7	—	rna	73	—	—

Ligands and binding sites

FME · N-formylmethionine · ligand · chains 1, 5

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

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