MolNFT v1 · #187722 · protein
RAD24-rfc ADP state
7STE: “RAD24-rfc ADP state”. Electron microscopy, 3 ligands (ADP, ATP, MG). MolNFT v1 #187722 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7STE
- Type
- protein
- Length
- 1,774 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P40339, P38629, P40348, P38251, P32641
- Ligands
- ADP, ATP, MG
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 315 | — | P40339 |
| C | — | protein | 324 | — | P38629 |
| D | — | protein | 327 | — | P40348 |
| E | — | protein | 340 | — | P38251 |
| A | — | protein | 468 | — | P32641 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 4 copies · chains B, C, D, E
- ATP · Adenosine-5'-triphosphate · ligand · chains B, A
- MG · Magnesium ion · metal · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7STE · Rad24-RFC ADP state · the same entry in another collection · chain A against A, TM-score 1.00
- P38251 · AlphaFold monomer V2.0 prediction for replication factor C subunit 5 (P38251) · a predicted model of the same protein · chain E against A, TM-score 0.99
- P40348 · AlphaFold monomer V2.0 prediction for replication factor C subunit 2 (P40348) · a predicted model of the same protein · chain D against A, TM-score 0.90
- P40339 · AlphaFold monomer V2.0 prediction for replication factor C subunit 4 (P40339) · a predicted model of the same protein · chain B against A, TM-score 0.88
- P38629 · AlphaFold monomer V2.0 prediction for replication factor C subunit 3 (P38629) · a predicted model of the same protein · chain C against A, TM-score 0.86
- P32641 · AlphaFold monomer V2.0 prediction for checkpoint protein RAD24 (P32641) · a predicted model of the same protein · chain A against A, TM-score 0.54
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40339
- Every structure of UniProt P38629
- Every structure of UniProt P40348
- Every structure of UniProt P38251
- Every structure of UniProt P32641
- Elsewhere: RCSB PDB 7STE · PDBe 7STE · UniProt P40339 · UniProt P38629 · UniProt P40348 · UniProt P38251 · UniProt P32641
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