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MolNFT v1 · #184220 · protein + RNA

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2

7OI7: “Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2”. Electron microscopy, 3 ligands (PNS, MG, ZN). MolNFT v1 #184220 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7OI7
Type
protein + RNA
Length
9,211 residues
Chains
54
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q5T653, P09001, Q9BYD3, Q9BYD2, Q7Z7H8, Q9Y3B7, Q9BYD1, Q6P1L8, Q9P015, Q9NX20, Q9NRX2, Q9H0U6, P49406, Q9BYC9, Q7Z2W9, Q9NWU5, Q16540, Q96A35, Q9P0M9, Q13084, Q9HD33, Q8TCC3, Q9BYC8, O75394, Q9BQ48, Q9NZE8, Q9BZE1, Q96DV4, Q9NYK5, Q9NQ50, Q8IXM3, Q9Y6G3, Q8N983, Q9H9J2, Q9BRJ2, Q9H2W6, Q96GC5, Q13405, Q8N5N7, Q4U2R6, Q86TS9, Q96EL3, Q6P161, Q7Z7F7, Q9BQC6, Q14197, Q8TAE8, Q9NVS2, Q9NP92, Q96EH3, L0R8F8, O14561
Ligands
PNS, MG, ZN

Structure

electron microscopy · 54 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
D—protein220—Q5T653
E—protein285—P09001
F—protein250—Q9BYD3
H—protein95—Q9BYD2
I—protein158—Q7Z7H8
J—protein140—Q9Y3B7
K—protein177—Q9BYD1
L—protein115—Q6P1L8
M—protein287—Q9P015
N—protein205—Q9NX20
O—protein152—Q9NRX2
P—protein141—Q9H0U6
Q—protein217—P49406
R—protein140—Q9BYC9
S—protein156—Q7Z2W9
T—protein159—Q9NWU5
U—protein139—Q16540
V—protein192—Q96A35
W—protein109—Q9P0M9
X—protein243—Q13084
Y—protein176—Q9HD33
Z—protein120—Q8TCC3
0—protein108—Q9BYC8
1—protein52—O75394
2—protein43—Q9BQ48
3—protein95—Q9NZE8
5—protein387—Q9BZE1
6—protein324—Q96DV4
7—protein287—Q9NYK5
8—protein99—Q9NQ50
9—protein117—Q8IXM3
a—protein82—Q9Y6G3
b—protein148—Q8N983
c—protein275—Q9H9J2
d—protein211—Q9BRJ2
e—protein217—Q9H2W6
f—protein116—Q96GC5
g—protein129—Q13405
h—protein100—Q8N5N7
i—protein97—Q4U2R6
j—protein85—Q86TS9
k—protein80—Q96EL3
l—protein23—Q6P161
m—protein45—Q7Z7F7
o—protein79—Q9BQC6
p—protein127—Q14197
q—protein124—Q8TAE8
r—protein146—Q9NVS2
s—protein370—Q9NP92
u—protein111—Q96EH3
v—protein69—L0R8F8
w—protein79—O14561
A—rna1054——
B—rna56——

Ligands and binding sites

  • PNS · 4'-phosphopantetheine · ligand · chains v, w
  • MG · Magnesium ion · metal · 49 copies · chains W, g, A, F, Q, U, R
  • ZN · Zinc ion · metal · 2 copies · chains I, r, 0

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7OI7 · Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2 · the same entry in another collection · chain O against O, TM-score 1.00

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