GL1X · GenesisL1 explorer

MolNFT v1 · #175398 · protein

Crystal structure of T2R-ttl-(+)-6-br-JP18 complex

7CPD: “Crystal structure of T2R-ttl-(+)-6-br-JP18 complex”. X-ray diffraction, 5 ligands (GTP, G9U, GDP). MolNFT v1 #175398 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7CPD
Type
protein
Length
2,116 residues
Chains
6
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P81947, Q6B856, Q9H169, E1BQ43
Ligands
GTP, G9U, GDP, MG, CA

Structure

x-ray diffraction · 6 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein437—P81947
B—protein417—Q6B856
C—protein440—P81947
D—protein421—Q6B856
E—protein121—Q9H169
F—protein280—E1BQ43

Ligands and binding sites

  • GTP · Guanosine-5'-triphosphate · ligand · 2 copies · chains A, C
  • G9U · (6R)-6-[(6-bromanyl-1H-indol-3-yl)methyl]-6,7,8,9-tetrahydrobenzo[7]annulen-5-one · ligand · 2 copies · chains A, B, C, D
  • GDP · Guanosine-5'-diphosphate · ligand · 2 copies · chains B, D
  • MG · Magnesium ion · metal · 3 copies · chains B, C
  • CA · Calcium ion · metal · 3 copies · chains A, B
  • MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A, B
  • GOL · Glycerol · additive · chains C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7CPD · Crystal structure of T2R-TTL-(+)-6-Br-JP18 complex · the same entry in another collection · chain C against C, TM-score 1.00
  • Q9H169 · AlphaFold monomer V2.0 prediction for stathmin-4 (Q9H169) · a predicted model of the same protein · chain E against A, TM-score 0.76

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