MolNFT v2 · #206999 · protein
AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated narrow membrane tubes, centered on beta-Arf1
8D9U: “AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated narrow membrane tubes, centered on beta-Arf1”. Electron microscopy at 20.0, 2 ligands (GTP, MG). MolNFT v2 #206999 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 8D9U
- Type
- protein
- Length
- 13,422 residues
- Chains
- 54
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 20.0
- Source
- Homo sapiens; Human immunodeficiency virus 1; Mus musculus
- UniProt
- P84077, Q90VU7, P04439, Q10567, P22892, P35585, Q96PC3
- Ligands
- GTP, MG
Structure
electron microscopy · resolution 20.0 · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, H, J, X, K, Z, O, a, P, b, Q, c | — | protein | 180 | — | P84077 |
| N, n, o, p, q, r | — | protein | 137 | — | Q90VU7 |
| Y, x, y, z, 0, 1 | — | protein | 18 | — | P04439 |
| B, A, D, E, F, I | — | protein | 570 | — | Q10567 |
| G, R, T, U, V, W | — | protein | 585 | — | P22892 |
| L, d, e, f, g, h | — | protein | 10 | — | Q90VU7 |
| M, i, j, k, l, m | — | protein | 415 | — | P35585 |
| S, s, t, u, v, w | — | protein | 142 | — | Q96PC3 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · 12 copies · chains C, H, J, X, K, Z, O, a, P, b, Q, c
- MG · Magnesium ion · metal · 12 copies · chains C, H, J, X, K, Z, O, a, P, b, Q, c
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- Q96PC3 · AlphaFold monomer V2.0 prediction for ap-1 complex subunit sigma-3 (Q96PC3) · a predicted model of the same protein · chain w against A, TM-score 0.98
- Q10567 · AlphaFold monomer V2.0 prediction for ap-1 complex subunit beta-1 (Q10567) · a predicted model of the same protein · chain I against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P84077
- Every structure of UniProt Q90VU7
- Every structure of UniProt P04439
- Every structure of UniProt Q10567
- Every structure of UniProt P22892
- Every structure of UniProt P35585
- Every structure of UniProt Q96PC3
- Elsewhere: RCSB PDB 8D9U · PDBe 8D9U · UniProt P84077 · UniProt Q90VU7 · UniProt P04439 · UniProt Q10567 · UniProt P22892 · UniProt P35585 · UniProt Q96PC3
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