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MolNFT v2 · #191799 · protein + RNA

Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4

7QH7: “Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4”. Electron microscopy at 2.89, 2 ligands (MG, ZN). MolNFT v2 #191799 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7QH7
Type
protein + RNA
Length
8,329 residues
Chains
49
Method
electron microscopy
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.89
Source
Homo sapiens
UniProt
Q5T653, P09001, Q9BYD3, Q9BYD2, Q7Z7H8, Q9BYD1, Q6P1L8, Q9P015, Q9NX20, Q9NRX2, Q9H0U6, P49406, Q9BYC9, Q7Z2W9, Q9NWU5, Q96A35, Q9P0M9, Q13084, Q9HD33, Q8TCC3, Q9BYC8, O75394, Q9BQ48, Q9NZE8, Q9BZE1, Q9NYK5, Q8IXM3, Q8N983, Q9H9J2, Q9BRJ2, Q13405, Q8N5N7, Q4U2R6, Q86TS9, Q9BQC6, Q8TAE8, Q9NVS2, Q9NP92, Q96EH3, L0R8F8, O14561, Q9P0J6
Ligands
MG, ZN

Structure

electron microscopy · resolution 2.89 · 49 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
D—protein215—Q5T653
E—protein304—P09001
F—protein250—Q9BYD3
H—protein95—Q9BYD2
I—protein30—Q7Z7H8
K—protein177—Q9BYD1
L—protein115—Q6P1L8
M—protein287—Q9P015
N—protein201—Q9NX20
O—protein152—Q9NRX2
P—protein141—Q9H0U6
Q—protein217—P49406
R—protein139—Q9BYC9
S—protein156—Q7Z2W9
T—protein155—Q9NWU5
U—protein125——
V—protein48—Q96A35
W—protein100—Q9P0M9
X—protein243—Q13084
Y—protein175—Q9HD33
Z—protein115—Q8TCC3
0—protein108—Q9BYC8
1—protein49—O75394
2—protein45—Q9BQ48
3—protein95—Q9NZE8
5—protein392—Q9BZE1
6—protein292——
7—protein287—Q9NYK5
9—protein117—Q8IXM3
a—protein80——
b—protein148—Q8N983
c—protein275—Q9H9J2
d—protein157—Q9BRJ2
f—protein17——
g—protein129—Q13405
h—protein101—Q8N5N7
i—protein97—Q4U2R6
j—protein86—Q86TS9
o—protein81—Q9BQC6
p—protein125——
q—protein101—Q8TAE8
r—protein129—Q9NVS2
s—protein370—Q9NP92
u—protein111—Q96EH3
v—protein69—L0R8F8
w—protein79—O14561
A—rna1256——
B—rna56——
4—protein37—Q9P0J6

Ligands and binding sites

  • MG · Magnesium ion · metal · 50 copies · chains E, A, U, F
  • ZN · Zinc ion · metal · 3 copies · chains 0, I, r, 4

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7QH7 · Cryo-EM structure of the human mtlsu assembly intermediate upon MRM2 depletion - class 4 · the same entry in another collection · chain B against B, TM-score 1.00

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