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MolNFT v1 · #185828 · protein + RNA

Cryo-EM structure of the human mtlsu assembly intermediate upon MRM2 depletion - class 4

7QH7: “Cryo-EM structure of the human mtlsu assembly intermediate upon MRM2 depletion - class 4”. Electron microscopy, 2 ligands (MG, ZN). MolNFT v1 #185828 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7QH7
Type
protein + RNA
Length
8,329 residues
Chains
49
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q5T653, P09001, Q9BYD3, Q9BYD2, Q7Z7H8, Q9BYD1, Q6P1L8, Q9P015, Q9NX20, Q9NRX2, Q9H0U6, P49406, Q9BYC9, Q7Z2W9, Q9NWU5, Q96A35, Q9P0M9, Q13084, Q9HD33, Q8TCC3, Q9BYC8, O75394, Q9BQ48, Q9NZE8, Q9BZE1, Q9NYK5, Q8IXM3, Q8N983, Q9H9J2, Q9BRJ2, Q13405, Q8N5N7, Q4U2R6, Q86TS9, Q9BQC6, Q8TAE8, Q9NVS2, Q9NP92, Q96EH3, L0R8F8, O14561, Q9P0J6
Ligands
MG, ZN

Structure

electron microscopy · 49 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
D—protein215—Q5T653
E—protein304—P09001
F—protein250—Q9BYD3
H—protein95—Q9BYD2
I—protein30—Q7Z7H8
K—protein177—Q9BYD1
L—protein115—Q6P1L8
M—protein287—Q9P015
N—protein201—Q9NX20
O—protein152—Q9NRX2
P—protein141—Q9H0U6
Q—protein217—P49406
R—protein139—Q9BYC9
S—protein156—Q7Z2W9
T—protein155—Q9NWU5
U—protein125——
V—protein48—Q96A35
W—protein100—Q9P0M9
X—protein243—Q13084
Y—protein175—Q9HD33
Z—protein115—Q8TCC3
0—protein108—Q9BYC8
1—protein49—O75394
2—protein45—Q9BQ48
3—protein95—Q9NZE8
5—protein392—Q9BZE1
6—protein292——
7—protein287—Q9NYK5
9—protein117—Q8IXM3
a—protein80——
b—protein148—Q8N983
c—protein275—Q9H9J2
d—protein157—Q9BRJ2
f—protein17——
g—protein129—Q13405
h—protein101—Q8N5N7
i—protein97—Q4U2R6
j—protein86—Q86TS9
o—protein81—Q9BQC6
p—protein125——
q—protein101—Q8TAE8
r—protein129—Q9NVS2
s—protein370—Q9NP92
u—protein111—Q96EH3
v—protein69—L0R8F8
w—protein79—O14561
A—rna1256——
B—rna56——
4—protein37—Q9P0J6

Ligands and binding sites

  • MG · Magnesium ion · metal · 50 copies · chains E, A, U, F
  • ZN · Zinc ion · metal · 3 copies · chains 0, I, r, 4

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7QH7 · Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4 · the same entry in another collection · chain P against P, TM-score 1.00

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