MolNFT v2 · #155043 · protein
Monomeric Form of Bovine Heart Cytochrome c Oxidase in the Fully Reduced State
6JY4: “Monomeric Form of Bovine Heart Cytochrome c Oxidase in the Fully Reduced State”. X-ray diffraction at 1.95, 11 ligands (CQX, CDL, HEA). MolNFT v2 #155043 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JY4
- Type
- protein
- Length
- 1,729 residues
- Chains
- 13
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.95
- Source
- Bos taurus
- UniProt
- P00396, P68530, P00415, P00423, P00426, P00428, P07471, P00429, P04038, P07470, P13183, P00430, P10175
- Ligands
- CQX, CDL, HEA, PGV, CUA, CHD, PEK, NA, CU, MG, ZN
Structure
x-ray diffraction · resolution 1.95 · 13 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 514 | — | P00396 |
| B | — | protein | 227 | — | P68530 |
| C | — | protein | 254 | — | P00415 |
| D | — | protein | 136 | — | P00423 |
| E | — | protein | 102 | — | P00426 |
| F | — | protein | 91 | — | P00428 |
| G | — | protein | 72 | — | P07471 |
| H | — | protein | 75 | — | P00429 |
| I | — | protein | 70 | — | P04038 |
| J | — | protein | 55 | — | P07470 |
| K | — | protein | 49 | — | P13183 |
| L | — | protein | 44 | — | P00430 |
| M | — | protein | 40 | — | P10175 |
Ligands and binding sites
- CQX · (2S,3S,4S,5S,6R)-2-(2-decoxyethoxy)-6-(hydroxymethyl) oxane-3,4,5-triol · ligand · 7 copies · chains A, B, I, D, K, M, C, G
- CDL · Cardiolipin · ligand · 3 copies · chains A, B, I, C, J, L
- HEA · Heme-A · ligand · 2 copies · chains A, B
- PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate · ligand · 2 copies · chains A, C
- CUA · Dinuclear copper ion · ligand · chains B
- CHD · Cholic acid · ligand · chains A, C
- PEK · (1S)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(stearoyloxy)methyl]ethyl (5E,8E,11E,14E)-icosa-5,8, 11,14-tetraenoate · ligand · chains A, C, G
- NA · Sodium ion · metal · 2 copies · chains A, C
- CU · Copper (II) ion · metal · chains A
- MG · Magnesium ion · metal · chains A, B
- ZN · Zinc ion · metal · chains F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6JY4 · Monomeric form of bovine heart cytochrome C oxidase in the fully reduced state · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00396
- Every structure of UniProt P68530
- Every structure of UniProt P00415
- Every structure of UniProt P00423
- Every structure of UniProt P00426
- Every structure of UniProt P00428
- Every structure of UniProt P07471
- Every structure of UniProt P00429
- Every structure of UniProt P04038
- Every structure of UniProt P07470
- Every structure of UniProt P13183
- Every structure of UniProt P00430
- Every structure of UniProt P10175
- Elsewhere: RCSB PDB 6JY4 · PDBe 6JY4 · UniProt P00396 · UniProt P68530 · UniProt P00415 · UniProt P00423 · UniProt P00426 · UniProt P00428 · UniProt P07471 · UniProt P00429 · UniProt P04038 · UniProt P07470 · UniProt P13183 · UniProt P00430 · UniProt P10175
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