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Ligand · PEK

PEK · (1S)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(stearoyloxy)methyl]ethyl (5E,8E,11E,14E)-icosa-5,8, 11,14-tetraenoate

PEK, (1S)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(stearoyloxy)methyl]ethyl (5E,8E,11E,14E)-icosa-5,8, 11,14-tetraenoate (C43 H78 N O8 P, 768.1 g/mol), in the MolNFT structures on GenesisL1: bound in 47 records (35 PDB entries).…

Component
PEK
Formula
C43 H78 N O8 P
Class
ligand
Structures
47
PDB entries
35

Binding sites

PEK in 47 structures; the first of them:

  • 5IY5 · Electron transfer complex of cytochrome c and cytochrome c oxidase at 2.0 angstrom… · PEK C303 · binds HIS151, VAL155, ILE158, ALA203, THR207, LEU210, LEU215, LEU31 and 25 more
  • 5X1F · CO bound cytochrome c oxidase without pump laser irradiation at 278K · PEK B304 · binds TRP275, SER279, GLN59, LYS157, HIS158, ALA1, ARG17, LEU25 and 1 more
  • 5XDQ · Bovine heart cytochrome c oxidase in the fully oxidized state with pH 7.3 at 1.77… · PEK C303 · binds HIS151, VAL155, ILE158, ALA203, THR207, LEU210, LEU215, LEU31 and 25 more
  • 5XDX · Bovine heart cytochrome c oxidase in the reduced state with pH 7.3 at 1.99 angstrom… · PEK C303 · binds HIS151, VAL155, ALA203, THR207, LEU210, THR211, LEU215, LEU31 and 26 more
  • 5Z85 · The structure of azide-bound cytochrome c oxidase determined using the another batch… · PEK C307 · binds LYS157, HIS158, GLN161, THR168, LEU169, TYR172, ALA1, ARG17 and 10 more
  • 5ZCQ · Azide-bound cytochrome c oxidase structure determined using the crystals exposed to 10 mM… · PEK C307 · binds LYS157, HIS158, GLN161, LEU169, TYR172, ALA1, ARG17, PHE21 and 7 more
  • 6J8M · Low-dose structure of bovine heart cytochrome c oxidase in the fully oxidized state… · PEK C302 · binds HIS151, VAL155, ILE158, ALA203, THR207, LEU210, LEU215, LEU31 and 25 more
  • 6JUW · Bovine heart cytochrome C oxidase in catalitic intermediates at 1.80 ångström resolution · PEK C308 · binds VAL193, ILE84, LEU85, VAL91, THR95, PHE98, TRP240, PHE244 and 7 more

Residues it binds most

PHE 240, THR 226, LEU 196, ALA 198, TRP 228, HIS 222, ILE 210, TYR 197, VAL 158, GLY 171 (residue and the binding sites it lines).

Found with

  • HEA · Heme-A
  • PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate
  • CU · Copper (II) ion
  • MG · Magnesium ion
  • ZN · Zinc ion
  • CDL · Cardiolipin
  • CHD · Cholic acid
  • CUA · Dinuclear copper ion
  • NA · Sodium ion
  • DMU · Decyl-beta-D-maltopyranoside
  • PSC · (7R,17E,20E)-4-hydroxy-N,N,N-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosa-17,20-dien-1-aminium 4-oxide
  • TGL · Tristearoylglycerol

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