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Ligand · CHD

CHD · Cholic acid

CHD, Cholic acid (C24 H40 O5, 408.6 g/mol), in the MolNFT structures on GenesisL1: bound in 72 records (55 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
CHD
Formula
C24 H40 O5
Class
ligand
Structures
72
PDB entries
55

Binding sites

CHD in 72 structures; the first of them:

  • 5B3S · Bovine heart cytochrome c oxidase in the carbon monoxide-bound mixed-valence state at… · CHD C301 · binds LEU230, HIS233, TRP288, ASP300, THR301, TYR304, PHE305, TRP99 and 2 more
  • 5IY5 · Electron transfer complex of cytochrome c and cytochrome c oxidase at 2.0 angstrom… · CHD C301 · binds HIS233, TRP288, ASP300, THR301, TYR304, PHE305, TRP99, HIS103 and 1 more
  • 5X1F · CO bound cytochrome c oxidase without pump laser irradiation at 278K · CHD B302 · binds MET271, GLY272, TRP275, GLU62, THR63, THR66, ARG14, ARG17 and 3 more
  • 5XDQ · Bovine heart cytochrome c oxidase in the fully oxidized state with pH 7.3 at 1.77… · CHD B304 · binds MET271, GLY272, TRP275, GLN59, GLU62, THR63, THR66, ARG14 and 5 more
  • 5XDX · Bovine heart cytochrome c oxidase in the reduced state with pH 7.3 at 1.99 angstrom… · CHD B302 · binds MET271, GLY272, TRP275, GLN59, GLU62, THR63, THR66, ARG14 and 5 more

Residues it binds most

PHE 273, LEU 260, THR 270, ARG 261, TRP 205, HIS 119, TYR 190, GLY 94, MET 156, GLU 110 (residue and the binding sites it lines).

Found with

  • CDL · Cardiolipin
  • MG · Magnesium ion
  • ZN · Zinc ion
  • CUA · Dinuclear copper ion
  • HEA · Heme-A
  • PEK · (1S)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(stearoyloxy)methyl]ethyl (5E,8E,11E,14E)-icosa-5,8, 11,14-tetraenoate
  • PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate
  • CU · Copper (II) ion
  • NA · Sodium ion
  • DMU · Decyl-beta-D-maltopyranoside
  • PSC · (7R,17E,20E)-4-hydroxy-N,N,N-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosa-17,20-dien-1-aminium 4-oxide
  • TGL · Tristearoylglycerol

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