UniProt P00428
Cytochrome c oxidase subunit 5B, mitochondrial (P00428)
Cytochrome c oxidase subunit 5B, mitochondrial (UniProt P00428): 124 experimental structures and 1 predicted model on GenesisL1, 4 ligands bound, 143 pockets. Binding sites, druggability and experiment against prediction…
- UniProt
- P00428
- Protein
- Cytochrome c oxidase subunit 5B, mitochondrial
- Experimental structures
- 124
- Predicted models
- 1
- Ligands
- 4
- Pockets
- 143 · 22 records with a druggable one
Structures
125 records of P00428 in the MolNFT archive: 124 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1OCC | Structure of bovine heart cytochrome C oxidase at the fully oxidized state | x-ray diffraction | F, S | — | — |
| 1OCO | Bovine heart cytochrome C oxidase in carbon monoxide-bound state | x-ray diffraction | F, S | — | — |
| 1OCO | Bovine heart cytochrome C oxidase in carbon monoxide-bound state | x-ray diffraction | F, S | — | — |
| 1OCR | Bovine heart cytochrome C oxidase in the fully reduced state | x-ray diffraction | F, S | — | — |
| 1OCR | Bovine heart cytochrome C oxidase in the fully reduced state | x-ray diffraction | F, S | — | — |
| 1OCZ | Bovine heart cytochrome C oxidase in azide-bound state | x-ray diffraction | F, S | — | — |
| 1OCZ | Bovine heart cytochrome C oxidase in azide-bound state | x-ray diffraction | F, S | — | — |
| 1V54 | Bovine heart cytochrome c oxidase at the fully oxidized state | x-ray diffraction | F, S | — | — |
| 1V54 | Bovine heart cytochrome C oxidase at the fully oxidized state | x-ray diffraction | F, S | — | — |
| 1V55 | Bovine heart cytochrome c oxidase at the fully reduced state | x-ray diffraction | F, S | — | — |
| 1V55 | Bovine heart cytochrome C oxidase at the fully reduced state | x-ray diffraction | F, S | — | — |
| 2DYR | Bovine heart cytochrome C oxidase at the fully oxidized state | x-ray diffraction | F, S | — | — |
| 2DYR | Bovine heart cytochrome C oxidase at the fully oxidized state | x-ray diffraction | F, S | — | — |
| 2DYS | Bovine heart cytochrome C oxidase modified by DCCD | x-ray diffraction | F, S | — | — |
| 2DYS | Bovine heart cytochrome C oxidase modified by dccd | x-ray diffraction | F, S | — | — |
| 2EIJ | Bovine heart cytochrome C oxidase in the fully reduced state | x-ray diffraction | F, S | — | — |
| 2EIJ | Bovine heart cytochrome C oxidase in the fully reduced state | x-ray diffraction | F, S | — | — |
| 2EIK | Cadmium ion binding structure of bovine heart cytochrome C oxidase in the fully reduced state | x-ray diffraction | F, S | — | — |
| 2EIK | Cadmium ion binding structure of bovine heart cytochrome C oxidase in the fully reduced state | x-ray diffraction | F, S | — | — |
| 2EIL | Cadmium ion binding structure of bovine heart cytochrome C oxidase in the fully oxidized state | x-ray diffraction | F, S | — | — |
| 2EIL | Cadmium ion binding structure of bovine heart cytochrome C oxidase in the fully oxidized state | x-ray diffraction | F, S | — | — |
| 2EIM | Zinc ion binding structure of bovine heart cytochrome C oxidase in the fully reduced state | x-ray diffraction | F, S | — | — |
| 2EIM | Zinc ion binding structure of bovine heart cytochrome C oxidase in the fully reduced state | x-ray diffraction | F, S | — | — |
| 2EIN | Zinc ion binding structure of bovine heart cytochrome C oxidase in the fully oxidized state | x-ray diffraction | F, S | — | — |
| 2EIN | Zinc ion binding structure of bovine heart cytochrome C oxidase in the fully oxidized state | x-ray diffraction | F, S | — | — |
| 2OCC | Bovine heart cytochrome C oxidase at the fully oxidized state | x-ray diffraction | F, S | — | — |
| 2OCC | Bovine heart cytochrome C oxidase at the fully oxidized state | x-ray diffraction | F, S | — | — |
| 2Y69 | Bovine heart cytochrome c oxidase re-refined with molecular oxygen | x-ray diffraction | F, S | — | — |
| 2Y69 | Bovine heart cytochrome C oxidase re-refined with molecular oxygen | x-ray diffraction | F, S | — | — |
| 2YBB | Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (EMD-1876) | electron microscopy | Q | — | — |
| 2YBB | Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (emd-1876) | electron microscopy | Q | — | — |
| 2ZXW | Bovine heart cytochrome c oxidase at the fully oxidized state (1-s X-ray exposure dataset) | x-ray diffraction | F, S | — | — |
| 2ZXW | Bovine heart cytochrome C oxidase at the fully oxidized state (1-S X- ray exposure dataset) | x-ray diffraction | F, S | — | — |
| 3ABK | Bovine heart cytochrome c oxidase at the NO-bound fully reduced state (50K) | x-ray diffraction | F, S | — | — |
| 3ABK | Bovine heart cytochrome C oxidase at the no-bound fully reduced state (50K) | x-ray diffraction | F, S | — | — |
| 3ABL | Bovine heart cytochrome c oxidase at the fully oxidized state (15-s X-ray exposure dataset) | x-ray diffraction | F, S | — | — |
| 3ABL | Bovine heart cytochrome C oxidase at the fully oxidized state (15-S X-ray exposure dataset) | x-ray diffraction | F, S | — | — |
| 3ABM | Bovine heart cytochrome c oxidase at the fully oxidized state (200-s X-ray exposure dataset) | x-ray diffraction | F, S | — | — |
| 3ABM | Bovine heart cytochrome C oxidase at the fully oxidized state (200-S X-ray exposure dataset) | x-ray diffraction | F, S | — | — |
| 3AG1 | Bovine Heart Cytochrome c Oxidase in the Carbon Monoxide-bound Fully Reduced State at 280 K | x-ray diffraction | F, S | — | — |
| 3AG1 | Bovine heart cytochrome C oxidase in the carbon monoxide-bound fully reduced state at 280 K | x-ray diffraction | F, S | — | — |
| 3AG2 | Bovine Heart Cytochrome c Oxidase in the Carbon Monoxide-bound Fully Reduced State at 100 K | x-ray diffraction | F, S | — | — |
| 3AG2 | Bovine heart cytochrome C oxidase in the carbon monoxide-bound fully reduced state at 100 K | x-ray diffraction | F, S | — | — |
| 3AG3 | Bovine Heart Cytochrome c Oxidase in the Nitric Oxide-bound Fully Reduced State at 100 K | x-ray diffraction | F, S | — | — |
| 3AG3 | Bovine heart cytochrome C oxidase in the nitric oxide-bound fully reduced state at 100 K | x-ray diffraction | F, S | — | — |
| 3AG4 | Bovine Heart Cytochrome c Oxidase in the Cyanide Ion-bound Fully Reduced State at 100 K | x-ray diffraction | F, S | — | — |
| 3AG4 | Bovine heart cytochrome C oxidase in the cyanide ion-bound fully reduced state at 100 K | x-ray diffraction | F, S | — | — |
| 3ASN | Bovine heart cytochrome C oxidase in the fully oxidized state measured at 1.7470 angstrom wavelength | x-ray diffraction | F, S | — | — |
| 3ASN | Bovine heart cytochrome C oxidase in the fully oxidized state measured at 1.7470 ångström wavelength | x-ray diffraction | F, S | — | — |
| 3ASO | Bovine heart cytochrome C oxidase in the fully oxidized state measured at 0.9 angstrom wavelength | x-ray diffraction | F, S | — | — |
| 3ASO | Bovine heart cytochrome C oxidase in the fully oxidized state measured at 0.9 ångström wavelength | x-ray diffraction | F, S | — | — |
| 3WG7 | A 1.9 angstrom radiation damage free X-ray structure of large (420KDa) protein by femtosecond… | x-ray diffraction | F, S | — | — |
| 3WG7 | A 1.9 ångström radiation damage free X-ray structure of large (420KDA) protein by femtosecond… | x-ray diffraction | F, S | — | — |
| 3X2Q | X-ray structure of cyanide-bound bovine heart cytochrome c oxidase in the fully oxidized state at… | x-ray diffraction | F, S | — | — |
| 3X2Q | X-ray structure of cyanide-bound bovine heart cytochrome C oxidase in the fully oxidized state at… | x-ray diffraction | F, S | — | — |
| 5B1A | Bovine heart cytochrome C oxidase in the fully oxidized state at 1.5 ångström resolution | x-ray diffraction | F, S | — | — |
| 5B1B | Bovine heart cytochrome C oxidase in the fully reduced state at 1.6 ångström resolution | x-ray diffraction | F, S | — | — |
| 5B3S | Bovine heart cytochrome c oxidase in the carbon monoxide-bound mixed-valence state at 1.68 angstrom… | x-ray diffraction | F, S | PEK, PGV, ZN | 9 (best 0.86) |
| 5B3S | Bovine heart cytochrome C oxidase in the carbon monoxide-bound mixed- valence state at 1.68… | x-ray diffraction | F, S | — | — |
| 5GPN | Architecture of mammalian respirasome | electron microscopy | 3 | ZN | 2 (best 0.85) |
65 records more on the page itself.
Ligands
- ZN · Zinc ion · in 65 records
- PEK · (1S)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(stearoyloxy)methyl]ethyl (5E,8E,11E,14E)-icosa-5,8, 11,14-tetraenoate · in 33 records
- PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate · in 17 records
- CHD · Cholic acid · in 1 record
Experiment against prediction
- 3ABM chain S against the predicted model P00428: TM-score 0.98, RMSD 0.70 Å
- 3ABM chain S against the predicted model P00428: TM-score 0.98, RMSD 0.70 Å
- 3ABL chain S against the predicted model P00428: TM-score 0.98, RMSD 0.70 Å
- 3ABL chain S against the predicted model P00428: TM-score 0.98, RMSD 0.70 Å
- 8D4T chain S against the predicted model P00428: TM-score 0.98, RMSD 0.68 Å
- 8D4T chain S against the predicted model P00428: TM-score 0.98, RMSD 0.68 Å
- 2ZXW chain S against the predicted model P00428: TM-score 0.98, RMSD 0.71 Å
- 2ZXW chain S against the predicted model P00428: TM-score 0.98, RMSD 0.71 Å
- 2Y69 chain S against the predicted model P00428: TM-score 0.98, RMSD 0.71 Å
- 2Y69 chain S against the predicted model P00428: TM-score 0.98, RMSD 0.71 Å
Elsewhere
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