MolNFT v2 · #152868 · protein + RNA
TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel
6I0Y: “TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel”. Electron microscopy at 3.2, 3 ligands (TRP, MG, ZN). MolNFT v2 #152868 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6I0Y
- Type
- protein + RNA
- Length
- 6,599 residues
- Chains
- 36
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.2
- Source
- Escherichia coli; Homo sapiens
- UniProt
- P60624, P0A7N4, P0A7N9, P0A7P5, P0A7Q1, P0A7Q6, P0A7J3, P0A7K2, P0AD89, P68919, P60422, P60438, P60723, P62399, P0AG55, P0A7R1, P0A7J7, P0AA10, P0ADY3, P02413, P0ADY7, P0AG44, P0C018, P0A7K6, P0A7L3, P0AG48, P61175, P0ADZ0, P0A7L8, P0A7M2, P0A7M6, P0AG51, Q8WZ42
- Ligands
- TRP, MG, ZN
Structure
electron microscopy · resolution 3.2 · 36 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| h | — | protein | 102 | — | P60624 |
| 0 | — | protein | 56 | — | P0A7N4 |
| 1 | — | protein | 50 | — | P0A7N9 |
| 2 | — | protein | 46 | — | P0A7P5 |
| 3 | — | protein | 64 | — | P0A7Q1 |
| 4 | — | protein | 38 | — | P0A7Q6 |
| 5 | — | protein | 148 | — | P0A7J3 |
| 6 | — | protein | 30 | — | P0A7K2 |
| 7 | — | protein | 16 | — | P0AD89 |
| 8 | — | protein | 94 | — | P68919 |
| A | — | rna | 2854 | — | — |
| B | — | rna | 118 | — | — |
| C | — | protein | 271 | — | P60422 |
| D | — | protein | 209 | — | P60438 |
| E | — | protein | 201 | — | P60723 |
| F | — | protein | 177 | — | P62399 |
| G | — | protein | 175 | — | P0AG55 |
| H | — | protein | 50 | — | P0A7R1 |
| I | — | protein | 141 | — | P0A7J7 |
| J | — | protein | 142 | — | P0AA10 |
| K | — | protein | 122 | — | P0ADY3 |
| L | — | protein | 143 | — | P02413 |
| M | — | protein | 136 | — | P0ADY7 |
| N | — | protein | 120 | — | P0AG44 |
| O | — | protein | 116 | — | P0C018 |
| P | — | protein | 114 | — | P0A7K6 |
| Q | — | protein | 117 | — | P0A7L3 |
| R | — | protein | 103 | — | P0AG48 |
| S | — | protein | 110 | — | P61175 |
| T | — | protein | 93 | — | P0ADZ0 |
| V | — | rna | 77 | — | — |
| W | — | protein | 79 | — | P0A7L8 |
| X | — | protein | 77 | — | P0A7M2 |
| Y | — | protein | 63 | — | P0A7M6 |
| Z | — | protein | 58 | — | P0AG51 |
| z | — | protein | 89 | — | Q8WZ42 |
Ligands and binding sites
- TRP · Tryptophan · ligand · chains 7, A
- MG · Magnesium ion · metal · 143 copies · chains 4, A, E, L, C, R, D, 3, T, B
- ZN · Zinc ion · metal · chains 4
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6I0Y · Tnac-stalled ribosome complex with the titin I27 domain folding close to the ribosomal… · the same entry in another collection · chain 0 against 0, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P60624
- Every structure of UniProt P0A7N4
- Every structure of UniProt P0A7N9
- Every structure of UniProt P0A7P5
- Every structure of UniProt P0A7Q1
- Every structure of UniProt P0A7Q6
- Every structure of UniProt P0A7J3
- Every structure of UniProt P0A7K2
- Every structure of UniProt P0AD89
- Every structure of UniProt P68919
- Every structure of UniProt P60422
- Every structure of UniProt P60438
- Every structure of UniProt P60723
- Every structure of UniProt P62399
- Every structure of UniProt P0AG55
- Every structure of UniProt P0A7R1
- Every structure of UniProt P0A7J7
- Every structure of UniProt P0AA10
- Every structure of UniProt P0ADY3
- Every structure of UniProt P02413
- Every structure of UniProt P0ADY7
- Every structure of UniProt P0AG44
- Every structure of UniProt P0C018
- Every structure of UniProt P0A7K6
- Every structure of UniProt P0A7L3
- Every structure of UniProt P0AG48
- Every structure of UniProt P61175
- Every structure of UniProt P0ADZ0
- Every structure of UniProt P0A7L8
- Every structure of UniProt P0A7M2
- Every structure of UniProt P0A7M6
- Every structure of UniProt P0AG51
- Every structure of UniProt Q8WZ42
- Elsewhere: RCSB PDB 6I0Y · PDBe 6I0Y · UniProt P60624 · UniProt P0A7N4 · UniProt P0A7N9 · UniProt P0A7P5 · UniProt P0A7Q1 · UniProt P0A7Q6 · UniProt P0A7J3 · UniProt P0A7K2 · UniProt P0AD89 · UniProt P68919 · UniProt P60422 · UniProt P60438 · UniProt P60723 · UniProt P62399 · UniProt P0AG55 · UniProt P0A7R1 · UniProt P0A7J7 · UniProt P0AA10 · UniProt P0ADY3 · UniProt P02413 · UniProt P0ADY7 · UniProt P0AG44 · UniProt P0C018 · UniProt P0A7K6 · UniProt P0A7L3 · UniProt P0AG48 · UniProt P61175 · UniProt P0ADZ0 · UniProt P0A7L8 · UniProt P0A7M2 · UniProt P0A7M6 · UniProt P0AG51 · UniProt Q8WZ42
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