MolNFT v1 · #189625 · protein
Rba sphaeroides wt rc-LH1 monomer
7VNY: “Rba sphaeroides wt rc-LH1 monomer”. Electron microscopy, 7 ligands (BCL, SPO, PC1). MolNFT v1 #189625 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VNY
- Type
- protein
- Length
- 2,283 residues
- Chains
- 33
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q3J1A5, Q3J1A6, Q3J170, Q3J1A4, Q3J1A3, P13402, U5NME9
- Ligands
- BCL, SPO, PC1, U10, BPB, CDL, FE2
Structure
electron microscopy · 13 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | — | protein | 281 | — | Q3J1A5 |
| M | — | protein | 305 | — | Q3J1A6 |
| H | — | protein | 247 | — | Q3J170 |
| A, D, F, I, K, O, Q, S, U, W, 3, 9 | — | protein | 54 | — | Q3J1A4 |
| B | — | protein | 45 | — | Q3J1A3 |
| E, G, J, N, P, R, T, V, C | — | protein | 43 | — | Q3J1A3 |
| Z | — | protein | 42 | — | Q3J1A3 |
| 1 | — | protein | 53 | — | Q3J1A4 |
| 2 | — | protein | 39 | — | Q3J1A3 |
| 7 | — | protein | 46 | — | Q3J1A4 |
| 8, 0 | — | protein | 44 | — | Q3J1A3 |
| X | — | protein | 52 | — | P13402 |
| Y | — | protein | 50 | — | U5NME9 |
Ligands and binding sites
- BCL · Bacteriochlorophyll A · ligand · 32 copies · chains L, M, A, B, 9, 0, D, E, F, G, I, J, K, N, O, P, Q, R, S, T, U, V, W, C, 3, Z, 1, 2, 7, 8, X
- SPO · Spheroidene · ligand · 26 copies · chains M, O, A, B, D, 9, E, F, G, I, J, K, N, P, Q, R, S, T, U, V, W, C, 3, Z, 1, 8, 0, 7, X
- PC1 · 1,2-diacyl-sn-glycero-3-phosphocholine · ligand · 9 copies · chains L, D, 7, X, M, H, A, 9, F, U, W
- U10 · Ubiquinone-10 · ligand · 4 copies · chains L, M, Y
- BPB · Bacteriopheophytin B · ligand · 2 copies · chains L, M
- CDL · Cardiolipin · ligand · 2 copies · chains L, M, H, I, D, F
- FE2 · Fe (II) ion · metal · chains L, M
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7VNY · Rba sphaeroides WT RC-LH1 monomer · the same entry in another collection · chain J against J, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3J1A5
- Every structure of UniProt Q3J1A6
- Every structure of UniProt Q3J170
- Every structure of UniProt Q3J1A4
- Every structure of UniProt Q3J1A3
- Every structure of UniProt P13402
- Every structure of UniProt U5NME9
- Elsewhere: RCSB PDB 7VNY · PDBe 7VNY · UniProt Q3J1A5 · UniProt Q3J1A6 · UniProt Q3J170 · UniProt Q3J1A4 · UniProt Q3J1A3 · UniProt P13402 · UniProt U5NME9
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