UniProt Q3J1A4
Light-harvesting protein B-875 alpha chain (Q3J1A4)
Light-harvesting protein B-875 alpha chain (UniProt Q3J1A4): 10 experimental structures and 1 predicted model on GenesisL1, 7 ligands bound, 90 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- Q3J1A4
- Protein
- Light-harvesting protein B-875 alpha chain
- Experimental structures
- 10
- Predicted models
- 1
- Ligands
- 7
- Pockets
- 90 · 6 records with a druggable one
Structures
11 records of Q3J1A4 in the MolNFT archive: 10 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 7PIL | Cryo-EM structure of the Rhodobacter sphaeroides RC-LH1-PufXY monomer complex at 2.5 A | electron microscopy | AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN | BCL, SPO, 3PE, U10, CD4 | — |
| 7VA9 | Rba sphaeroides PufY-KO RC-LH1 dimer type-1 | electron microscopy | A, D, F, I, K, O, Q, S, U, W, Y, 1, 7, 9, a, d, f, i, k, o, q, s, u, w, y, 5, 6, 3 | PC1, U10, SPO, CDL, BCL | 12 (best 0.85) |
| 7VB9 | Rba sphaeroides PufY-KO RC-LH1 dimer type-2 | electron microscopy | A, D, F, I, K, O, 7, 9, a, d, f, i, k, o, q, s, u, w, y, 5, 6, Q | SPO, PC1, BCL, CDL | 12 (best 0.84) |
| 7VNM | Rba sphaeroides PufY-KO RC-LH1 monomer | electron microscopy | A, D, F, I, K, O, Q, S, U, W, 7, 9, 1 | PC1, U10, SPO, CDL, BCL | 16 (best 0.82) |
| 7VNM | Rba sphaeroides pufy-ko rc-LH1 monomer | electron microscopy | A, D, F, I, K, O, Q, S, U, W, 7, 9, 1 | PC1, SPO, BCL | — |
| 7VNY | Rba sphaeroides WT RC-LH1 monomer | electron microscopy | A, D, F, I, K, O, Q, S, U, W, 3, 1, 7, 9 | PC1, U10, SPO, CDL, BCL | 16 (best 0.84) |
| 7VNY | Rba sphaeroides wt rc-LH1 monomer | electron microscopy | A, D, F, I, K, O, Q, S, U, W, 3, 1, 7, 9 | PC1, SPO, CDL, BCL | — |
| 7VOR | The structure of dimeric photosynthetic RC-LH1 supercomplex in Class-1 | electron microscopy | A, D, F, I, K, O, Q, S, U, W, 3, 1, 7, 9, a, d, f, i, k, o, q, s, u, w, 5, b1, 6, b9 | PC1, U10, SPO, CDL, BCL | 16 (best 0.86) |
| 7VOT | The structure of dimeric photosynthetic RC-LH1 supercomplex in Class-2 | electron microscopy | A, D, F, I, K, O, Q, S, U, W, 3, 1, 7, 9, a, d, f, i, k, o, q, s, u, w, 5, b1, 6, b9 | PC1, U10, SPO, CDL, BCL | 18 (best 0.85) |
| 7VOY | Rba sphaeroides pufx-ko rc-LH1 | electron microscopy | A, D, F, I, K, O, Q, S, U, W, Y, 1, 7, 9, 4, 6, C | BCL | — |
| Q3J1A4 | AlphaFold monomer V2.0 prediction for light-harvesting protein B-875 alpha chain (Q3J1A4) | predicted | A | — | — |
Ligands
- BCL · Bacteriochlorophyll A · in 10 records
- SPO · Spheroidene · in 9 records
- PC1 · 1,2-diacyl-sn-glycero-3-phosphocholine · in 8 records
- CDL · Cardiolipin · in 7 records
- U10 · Ubiquinone-10 · in 6 records
- 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine · in 1 record
- CD4 · (2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate · in 1 record
Experiment against prediction
- 7VB9 chain 5 against the predicted model Q3J1A4: TM-score 0.73, RMSD 1.76 Å
- 7VB9 chain y against the predicted model Q3J1A4: TM-score 0.73, RMSD 1.76 Å
- 7VNM chain 1 against the predicted model Q3J1A4: TM-score 0.73, RMSD 1.86 Å
- 7VNM chain 1 against the predicted model Q3J1A4: TM-score 0.73, RMSD 1.86 Å
- 7VB9 chain w against the predicted model Q3J1A4: TM-score 0.73, RMSD 1.88 Å
- 7VB9 chain O against the predicted model Q3J1A4: TM-score 0.73, RMSD 1.91 Å
- 7VB9 chain K against the predicted model Q3J1A4: TM-score 0.71, RMSD 1.92 Å
- 7VA9 chain y against the predicted model Q3J1A4: TM-score 0.71, RMSD 1.76 Å
- 7VA9 chain 1 against the predicted model Q3J1A4: TM-score 0.71, RMSD 1.76 Å
- 7VA9 chain Y against the predicted model Q3J1A4: TM-score 0.71, RMSD 1.76 Å
Elsewhere
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