Ligand · SPO
SPO · Spheroidene
SPO, Spheroidene (C41 H60 O, 568.9 g/mol), in the MolNFT structures on GenesisL1: bound in 17 records (16 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- SPO
- Formula
- C41 H60 O
- Class
- ligand
- Structures
- 17
- PDB entries
- 16
Binding sites
SPO in 17 structures; the first of them:
- 4V9G · RC-LH1-PufX dimer complex from Rhodobacter sphaeroides · SPO AM406 · binds MET30, LEU33, TRP66, PHE67, PHE68, GLY71, PHE74, TRP75 and 14 more
- 7DDQ · Structure of RC-LH1-PufX from Rhodobacter veldkampii · SPO N201 · binds PHE25, ALA28, VAL29, HIS32, LEU36, TRP43, LEU44, TYR23 and 13 more
- 7PIL · Cryo-EM structure of the Rhodobacter sphaeroides RC-LH1-PufXY monomer complex at 2.5 A · SPO AA1002 · binds PHE4, LYS6, ILE7, ILE10, PHE17, GLN20, PHE23, LEU24 and 13 more
Residues it binds most
PHE 177, LEU 115, VAL 170, ILE 119, ALA 138, GLY 135, TRP 106, MET 92, TYR 135, GLN 144 (residue and the binding sites it lines).
Found with
- BCL · Bacteriochlorophyll A
- BPH · Bacteriopheophytin A
- U10 · Ubiquinone-10
- FE · Fe (III) ion
- CDL · Cardiolipin
- LDA · Lauryl dimethylamine-N-oxide
- CL · Chloride ion
- LMT · Dodecyl-beta-D-maltoside
- 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine
- PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate
- FE2 · Fe (II) ion
- PC1 · 1,2-diacyl-sn-glycero-3-phosphocholine
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