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Ligand · LDA

LDA · Lauryl dimethylamine-N-oxide

LDA, Lauryl dimethylamine-N-oxide (C14 H31 N O, 229.4 g/mol), in the MolNFT structures on GenesisL1: bound in 114 records (81 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
LDA
Formula
C14 H31 N O
Class
additive
Structures
114
PDB entries
81

Binding sites

LDA in 114 structures; the first of them:

  • 5D5D · In meso in situ serial X-ray crystallography structure of AlgE at 100 K · LDA A504 · binds PHE88, ALA127, ALA128, TYR190
  • 5DEL · Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with… · LDA A605 · binds GLU164
  • 5EIY · Bacterial cellulose synthase bound to a substrate analogue · LDA A922 · binds TRP542, LEU553, GLY557, TRP558, TRP570
  • 5FI8 · Crystal structure of plasmodium falciparum dihydroorotate dehydrogenase bounded with… · LDA A1004 · binds GLU164, LEU167, TYR168, ASN195, ILE196, LEU197, PRO198, TYR199
  • 5LRI · Photosynthetic reaction center mutant with GLUL212 replaced with TRP (chain L, EL212W) · LDA M701 · binds TRP151, PRO200, ALA207, PHE208, TRP268, MET272
  • 5LSE · PHOTOSYNTHETIC REACTION CENTER MUTANT WITH Glu L212 replaced with Ala (CHAIN L, EL212W)… · LDA M406 · binds TRP151, PRO200, GLY203, LEU204, ALA207, PHE208, TRP268, MET272 and 3 more
  • 5MLZ · Dolichyl phosphate mannose synthase in complex with GDP and Mg2+ · LDA A404 · binds SER243, TRP280, TRP284
  • 5MM0 · Dolichyl phosphate mannose synthase in complex with GDP-mannose and Mn2+ (donor complex) · LDA A404 · binds SER243, LEU246, TRP280, ILE283, TRP284
  • 5NJ4 · From macrocrystals to microcrystals: a strategy for membrane protein serial… · LDA H701 · binds TRP25, VAL28, LEU29, ARG33, PHE202, GLY205, PHE206, PHE256 and 2 more
  • 5NXR · Trimeric structure of Omp-Pst1, the major porin from Providencia stuartii · LDA A401 · binds LEU267, VAL268, ALA269, ILE281, GLY282, TYR283, ILE304

Residues it binds most

LEU 433, PHE 398, TYR 273, GLY 230, TRP 210, ILE 237, VAL 209, ALA 201, PRO 154, SER 146 (residue and the binding sites it lines).

Found with

  • FE · Fe (III) ion
  • BCL · Bacteriochlorophyll A
  • BPH · Bacteriopheophytin A
  • SO4 · Sulfate ion
  • U10 · Ubiquinone-10
  • CDL · Cardiolipin
  • BCB · Bacteriochlorophyll B
  • BPB · Bacteriopheophytin B
  • NS5 · 15-cis-1,2-dihydroneurosporene
  • MQ7 · Menaquinone-7
  • HTO · Heptane-1,2,3-triol
  • HEC · Heme C

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