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Ligand · U10

U10 · Ubiquinone-10

U10, Ubiquinone-10 (C59 H90 O4, 863.4 g/mol), in the MolNFT structures on GenesisL1: bound in 88 records (68 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
U10
Formula
C59 H90 O4
Class
ligand
Structures
88
PDB entries
68

Binding sites

U10 in 88 structures; the first of them:

  • 4V9G · RC-LH1-PufX dimer complex from Rhodobacter sphaeroides · U10 AL304 · binds ALA172, ILE175, SER178, PHE179, THR182, LEU185, ALA186, LEU189 and 14 more
  • 5LRI · Photosynthetic reaction center mutant with GLUL212 replaced with TRP (chain L, EL212W) · U10 L303 · binds ILE175, SER178, THR182, LEU189, HIS190, LEU193, TRP212, ASP213 and 10 more
  • 5LSE · PHOTOSYNTHETIC REACTION CENTER MUTANT WITH Glu L212 replaced with Ala (CHAIN L, EL212W)… · U10 L304 · binds PRO171, MET174, ILE175, SER178, PHE179, THR182, LEU185, ALA186 and 20 more
  • 6Z1J · Photosynthetic Reaction Center From Rhodobacter Sphaeroides strain RV LSP… · U10 M405 · binds VAL26, PHE29, GLY35, THR38, TRP100, ARG103, LEU214, MET218 and 15 more
  • 6Z27 · Photosynthetic Reaction Center From Rhodobacter Sphaeroides strain RV LCP crystallization · U10 M408 · binds VAL26, PHE29, TYR30, VAL31, GLY35, THR38, PHE39, TRP100 and 20 more
  • 6Z5S · RC-LH1(14)-W complex from Rhodopseudomonas palustris · U10 M404 · binds LEU214, LEU215, MET218, HIS219, THR222, ILE223, LEU245, ALA248 and 20 more
  • 7A23 · Plant mitochondrial respiratory complex I · U10 H501 · binds LEU17, ALA21, VAL24, ARG28, PRO51, LEU52, ASP54, GLY55 and 14 more
  • 7DDQ · Structure of RC-LH1-PufX from Rhodobacter veldkampii · U10 a102 · binds ILE7, TRP8, PHE11, VAL16, GLN20, PHE23, LEU26, VAL29 and 25 more
  • 7EQD · Structure of photosynthetic LH1-rc super-complex of rhodospirillum rubrum · U10 L303 · binds THR183, ALA187, LEU190, HIS191, LEU194, ILE195, GLU213, ASN214 and 9 more
  • 7MH3 · Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant… · U10 L303 · binds ALA186, LEU189, HIS190, LEU193, VAL194, GLU212, ASP213, PHE216 and 7 more
  • 7MH5 · Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant… · U10 L302 · binds ALA186, LEU189, HIS190, LEU193, VAL194, GLU212, ASP213, PHE216 and 7 more
  • 7MHA · Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; W252V mutant · U10 L303 · binds LEU189, HIS190, LEU193, VAL194, GLU212, ASP213, PHE216, TYR222 and 6 more
  • 7OD5 · F(M197)H mutant structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides… · U10 M408 · binds VAL26, PHE29, TYR30, VAL31, GLY35, THR38, PHE39, TRP100 and 20 more
  • 7P0Q · F(M197)H mutant structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides… · U10 M405 · binds PHE24, VAL26, PHE29, TYR30, VAL31, GLY35, THR38, PHE39 and 24 more
  • 7P17 · F(M197)H mutant structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides… · U10 M402 · binds SER93, PHE96, PHE24, VAL26, PHE29, TYR30, VAL31, GLY35 and 24 more
  • 7PIL · Cryo-EM structure of the Rhodobacter sphaeroides RC-LH1-PufXY monomer complex at 2.5 A · U10 L302 · binds MET174, SER178, PHE179, THR182, LEU185, LEU189, HIS190, LEU193 and 16 more
  • 7PQD · Cryo-EM structure of the dimeric Rhodobacter sphaeroides RC-LH1 core complex at 2.9 A… · U10 L303 · binds PRO171, MET174, ILE175, SER178, PHE179, THR182, LEU185, ALA186 and 23 more
  • 7QSO · Bovine complex I in lipid nanodisc, State 3 (Slack) · U10 M701 · binds TYR119, GLU123, LEU126, VAL127, LEU130, ILE131, ILE133, THR134 and 29 more
  • 7RJB · Complex III2 from Candida albicans, inhibitor free, Rieske head domain in b position · U10 K403 · binds ILE122, LEU123, MET125, ALA126, PHE129, GLY143, VAL146, ILE147 and 9 more
  • 7RJC · Complex III2 from Candida albicans, inhibitor free, Rieske head domain in intermediate… · U10 K403 · binds ILE122, LEU123, MET125, ALA126, PHE129, GLY143, VAL146, ILE147 and 9 more

Residues it binds most

PHE 170, LEU 159, ILE 158, ALA 119, TRP 134, MET 121, THR 132, VAL 117, GLY 132, SER 85 (residue and the binding sites it lines).

Found with

  • CDL · Cardiolipin
  • BCL · Bacteriochlorophyll A
  • BPH · Bacteriopheophytin A
  • FE · Fe (III) ion
  • LDA · Lauryl dimethylamine-N-oxide
  • FES · Fe2/s2 (inorganic) cluster
  • SPO · Spheroidene
  • PC1 · 1,2-diacyl-sn-glycero-3-phosphocholine
  • 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine
  • SPN · Speroidenone
  • FMN · Flavin mononucleotide
  • SF4 · Iron/sulfur cluster

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