UniProt Q3J1A5
Reaction center protein L chain (Q3J1A5)
Reaction center protein L chain (UniProt Q3J1A5): 16 experimental structures and 1 predicted model on GenesisL1, 13 ligands bound, 79 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q3J1A5
- Protein
- Reaction center protein L chain
- Experimental structures
- 16
- Predicted models
- 1
- Ligands
- 13
- Pockets
- 79 · 8 records with a druggable one
Structures
17 records of Q3J1A5 in the MolNFT archive: 16 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2GMR | Photosynthetic reaction center mutant from Rhodobacter sphaeroides with Asp L210 replaced with Asn | x-ray diffraction | L | — | — |
| 2GMR | Photosynthetic reaction center mutant from rhodobacter sphaeroides with asp L210 replaced with asn | x-ray diffraction | L | — | — |
| 5LRI | Photosynthetic reaction center mutant with GLUL212 replaced with TRP (chain L, EL212W) | x-ray diffraction | L | BCL, BPH, U10, FE, CDL | — |
| 5LRI | Photosynthetic reaction center mutant with GLUL212 replaced with TRP (chain L, EL212W) | x-ray diffraction | L | BCL, BPH, U10, FE, CDL | — |
| 7P2C | F(M197)H mutant structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides strain RV… | x-ray diffraction | L | MYS, BCL, BPH, NKP, U10, FE | 15 (best 0.81) |
| 7P2C | F(M197)H mutant structure of photosynthetic reaction center from rhodobacter sphaeroides strain rv… | x-ray diffraction | L | MYS, BCL, BPH, NKP, U10, FE | — |
| 7PIL | Cryo-EM structure of the Rhodobacter sphaeroides RC-LH1-PufXY monomer complex at 2.5 A | electron microscopy | L | 3PE, BPH, U10, UQ1, BCL, CD4 | — |
| 7VA9 | Rba sphaeroides PufY-KO RC-LH1 dimer type-1 | electron microscopy | L, l | BCL, BPB, U10, PC1, FE2, CDL | 14 (best 0.83) |
| 7VB9 | Rba sphaeroides PufY-KO RC-LH1 dimer type-2 | electron microscopy | L, l | BCL, BPH, U10, FE2, PC1, CDL | 13 (best 0.84) |
| 7VNM | Rba sphaeroides PufY-KO RC-LH1 monomer | electron microscopy | L | BCL, BPH, PC1, U10, FE2, CDL | 8 (best 0.82) |
| 7VNM | Rba sphaeroides pufy-ko rc-LH1 monomer | electron microscopy | L | BCL, BPH, PC1, U10, FE2, CDL | — |
| 7VNY | Rba sphaeroides WT RC-LH1 monomer | electron microscopy | L | BCL, BPB, PC1, U10, FE2, CDL | 6 (best 0.84) |
| 7VNY | Rba sphaeroides wt rc-LH1 monomer | electron microscopy | L | BCL, BPB, PC1, U10, FE2, CDL | — |
| 7VOR | The structure of dimeric photosynthetic RC-LH1 supercomplex in Class-1 | electron microscopy | L, l | BCL, BPH, U10, PC1, FE2, CDL | 11 (best 0.86) |
| 7VOT | The structure of dimeric photosynthetic RC-LH1 supercomplex in Class-2 | electron microscopy | L, l | BCL, BPB, U10, PC1, FE2, CDL | 8 (best 0.85) |
| 7VOY | Rba sphaeroides pufx-ko rc-LH1 | electron microscopy | L | BCL, BPH, U10 | — |
| Q3J1A5 | AlphaFold monomer V2.0 prediction for reaction center protein L chain (Q3J1A5) | predicted | A | — | 4 (best 0.51) |
Ligands
- BCL · Bacteriochlorophyll A · in 14 records
- U10 · Ubiquinone-10 · in 14 records
- BPH · Bacteriopheophytin A · in 10 records
- CDL · Cardiolipin · in 10 records
- FE2 · Fe (II) ion · in 8 records
- PC1 · 1,2-diacyl-sn-glycero-3-phosphocholine · in 8 records
- FE · Fe (III) ion · in 5 records
- BPB · Bacteriopheophytin B · in 4 records
- MYS · Pentadecane · in 2 records
- NKP · (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate · in 2 records
- 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine · in 1 record
- CD4 · (2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate · in 1 record
- UQ1 · Ubiquinone-1 · in 1 record
Experiment against prediction
- 5LRI chain L against the predicted model Q3J1A5: TM-score 1.00, RMSD 0.26 Å
- 5LRI chain L against the predicted model Q3J1A5: TM-score 1.00, RMSD 0.26 Å
- 2GMR chain L against the predicted model Q3J1A5: TM-score 1.00, RMSD 0.34 Å
- 2GMR chain L against the predicted model Q3J1A5: TM-score 1.00, RMSD 0.34 Å
- 7PIL chain L against the predicted model Q3J1A5: TM-score 0.99, RMSD 0.53 Å
- 7VNY chain L against the predicted model Q3J1A5: TM-score 0.99, RMSD 0.57 Å
- 7VNY chain L against the predicted model Q3J1A5: TM-score 0.99, RMSD 0.57 Å
- 7VB9 chain l against the predicted model Q3J1A5: TM-score 0.99, RMSD 0.61 Å
- 7VNM chain L against the predicted model Q3J1A5: TM-score 0.99, RMSD 0.62 Å
- 7VNM chain L against the predicted model Q3J1A5: TM-score 0.99, RMSD 0.62 Å
Elsewhere
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