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Ligand · UQ1

UQ1 · Ubiquinone-1

UQ1, Ubiquinone-1 (C14 H18 O4, 250.3 g/mol), in the MolNFT structures on GenesisL1: bound in 9 records (9 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
UQ1
Formula
C14 H18 O4
Class
ligand
Structures
9
PDB entries
9

Binding sites

UQ1 in 9 structures; the first of them:

  • 7PIL · Cryo-EM structure of the Rhodobacter sphaeroides RC-LH1-PufXY monomer complex at 2.5 A · UQ1 L303 · binds TRP263, TRP265, TRP266, LEU86, LEU89, PHE90
  • 7YTL · Structure of a oxidoreductase in complex with qui · UQ1 A402 · binds HIS47, ALA294, TYR295, GLU298, PHE327, LEU328, SER330, PHE359 and 1 more
  • 6OI6 · Crystal structure of human sulfide quinone oxidoreductase in complex with coenzyme Q… · UQ1 A502 · binds TYR434, GLY436, GLY437, ALA439, PHE440
  • 6OIB · Crystal structure of human sulfide quinone oxidoreductase in complex with coenzyme Q · UQ1 A503 · binds GLN247, GLN251, LEU255, THR256, VAL257, TYR259
  • 6OIC · Crystal structure of human sulfide quinone oxidoreductase in complex with coenzyme Q… · UQ1 A502 · binds GLN247, GLN251, LEU255, THR256, VAL257, TYR259
  • 6WH6 · Crystal structure of human sulfide quinone oxidoreductase in complex with coenzyme Q… · UQ1 A503 · binds TYR82, ALA346, ALA347, TYR376, SER378, PRO380, LEU390, GLU392 and 7 more
  • 6WVF · E.COLI dsbb C104S with ubiquinone · UQ1 A501 · binds LEU164, ALA168, PHE171, LEU177, PRO179, CYS183, ILE184, GLU186 and 5 more
  • 7D6V · Mycobacterium smegmatis SDH1 in complex with UQ1 · UQ1 C301 · binds TYR236, THR145, PHE147, ILE150, LEU151, ILE154
  • 7V2R · Active state complex I from Q1-NADH dataset · UQ1 Q501 · binds THR66, PHE67, GLY68, LEU69, ALA70, ALA73, MET76, HIS92 and 4 more

Residues it binds most

ALA 11, LEU 16, TYR 15, MET 8, PRO 8, THR 13, PHE 8, TRP 8, GLU 9, GLN 4 (residue and the binding sites it lines).

Found with

  • FAD · Flavin-adenine dinucleotide
  • FES · Fe2/s2 (inorganic) cluster
  • SF4 · Iron/sulfur cluster
  • H2S · Hydrosulfuric acid
  • 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine
  • 8Q1 · S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy) butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate
  • ADP · Adenosine-5'-diphosphate
  • BCL · Bacteriochlorophyll A
  • BPH · Bacteriopheophytin A
  • CD4 · (2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate
  • CDL · Cardiolipin
  • CRO · {2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid

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