MolNFT v1 · #184571 · protein
Structure of C2S2M2-type photosystem supercomplex from arabidopsis thaliana (digitonin-extracted)
7OUI: “Structure of C2S2M2-type photosystem supercomplex from arabidopsis thaliana (digitonin-extracted)”. Electron microscopy, 18 ligands (CLA, CHL, LHG). MolNFT v1 #184571 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7OUI
- Type
- protein
- Length
- 8,342 residues
- Chains
- 52
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q39142, Q9S7M0, Q9LMQ2, P83755, P56777, P56778, P56761, P56779, P62095, P56780, P62100, P56782, P60129, P62109, P23321, P61839, Q39194, A0A7G2E9B1, P56790, Q9XF89, P04778, Q07473, Q39195
- Ligands
- CLA, CHL, LHG, BCR, AJP, LUT, LMG, NEX, SQD, DGD, PHO, PL9, BCT, HEM, XAT, CA…
Structure
electron microscopy · 25 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1, 3, 5, 7 | — | protein | 202 | — | Q39142 |
| 2, 6 | — | protein | 205 | — | Q9S7M0 |
| 4, 8 | — | protein | 204 | — | Q9LMQ2 |
| A, a | — | protein | 326 | — | P83755 |
| B, b | — | protein | 487 | — | P56777 |
| C, c | — | protein | 433 | — | P56778 |
| D, d | — | protein | 342 | — | P56761 |
| E, e | — | protein | 66 | — | P56779 |
| F, f | — | protein | 29 | — | P62095 |
| H, h | — | protein | 60 | — | P56780 |
| I, i | — | protein | 35 | — | P62100 |
| K, k | — | protein | 37 | — | P56782 |
| L, l | — | protein | 36 | — | P60129 |
| M, m | — | protein | 32 | — | P62109 |
| O, o | — | protein | 197 | — | P23321 |
| T, t | — | protein | 29 | — | P61839 |
| W, w | — | protein | 54 | — | Q39194 |
| X, x | — | protein | 36 | — | A0A7G2E9B1 |
| Z, z | — | protein | 62 | — | P56790 |
| S, s | — | protein | 216 | — | Q9XF89 |
| G, g | — | protein | 206 | — | P04778 |
| N, n | — | protein | 202 | — | P04778 |
| Y, y | — | protein | 213 | — | P04778 |
| R, r | — | protein | 235 | — | Q07473 |
| U, u | — | protein | 25 | — | Q39195 |
Ligands and binding sites
- CLA · Chlorophyll A · ligand · 162 copies · chains 2, 4, A, D, T, I, W, B, H, L, M, C, K, Z, S, X, N, G, 5, Y, R, 6, 8, a, d, t, i, w, b, h, l, m, c, k, z, s, x, n, g, 1, y, r
- CHL · Chlorophyll B · ligand · 60 copies · chains 1, 2, S, G, Y, N, r, R, 4, 5, 6, s, g, y, n, 8
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · ligand · 30 copies · chains 1, 2, B, R, A, D, L, C, I, W, T, M, S, Z, N, G, Y, 4, 5, 6, b, r, a, d, l, c, i, w, t, m, s, z, n, g, y, 8
- BCR · Beta-carotene · ligand · 22 copies · chains A, I, B, M, C, K, Z, S, D, F, H, T, b, a, i, m, c, k, z, s, d, f, h, t
- AJP · Digitonin · ligand · 22 copies · chains A, D, F, B, a, o, S, G, N, W, Y, d, f, O, b, s, g, n, w, y
- LUT · (3R,3'R,6S)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol · ligand · 18 copies · chains S, G, N, Y, R, s, g, n, y, r
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · ligand · 12 copies · chains A, C, I, W, b, B, D, L, M, Z, S, F, a, c, i, w, d, l, m, z, s, f
- NEX · (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R, 6R)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13, 15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol · ligand · 10 copies · chains S, G, N, Y, r, R, y, s, g, n
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · ligand · 8 copies · chains A, C, D, K, T, b, B, L, M, m, a, c, d, k, t, l
- DGD · Digalactosyl diacyl glycerol (dgdg) · ligand · 8 copies · chains A, I, O, b, B, D, H, C, a, i, o, d, h, c
- PHO · Pheophytin A · ligand · 4 copies · chains A, D, a, d
- PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone · ligand · 4 copies · chains A, D, L, T, a, d, l, t
- BCT · Bicarbonate ion · ligand · 2 copies · chains A, D, a, d
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains E, F, e, f
- XAT · (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-diepoxy-5,6,5',6'-tetrahydro-beta,beta-carotene-3,3'-diol · ligand · 2 copies · chains R, r
- CA · Calcium ion · metal · 4 copies · chains A, B, a, b
- FE2 · Fe (II) ion · metal · 2 copies · chains A, D, a, d
- CL · Chloride ion · ion · 2 copies · chains A, D, a, d
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7OUI · Structure of C2S2M2-type Photosystem supercomplex from Arabidopsis thaliana… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q39142
- Every structure of UniProt Q9S7M0
- Every structure of UniProt Q9LMQ2
- Every structure of UniProt P83755
- Every structure of UniProt P56777
- Every structure of UniProt P56778
- Every structure of UniProt P56761
- Every structure of UniProt P56779
- Every structure of UniProt P62095
- Every structure of UniProt P56780
- Every structure of UniProt P62100
- Every structure of UniProt P56782
- Every structure of UniProt P60129
- Every structure of UniProt P62109
- Every structure of UniProt P23321
- Every structure of UniProt P61839
- Every structure of UniProt Q39194
- Every structure of UniProt A0A7G2E9B1
- Every structure of UniProt P56790
- Every structure of UniProt Q9XF89
- Every structure of UniProt P04778
- Every structure of UniProt Q07473
- Every structure of UniProt Q39195
- Elsewhere: RCSB PDB 7OUI · PDBe 7OUI · UniProt Q39142 · UniProt Q9S7M0 · UniProt Q9LMQ2 · UniProt P83755 · UniProt P56777 · UniProt P56778 · UniProt P56761 · UniProt P56779 · UniProt P62095 · UniProt P56780 · UniProt P62100 · UniProt P56782 · UniProt P60129 · UniProt P62109 · UniProt P23321 · UniProt P61839 · UniProt Q39194 · UniProt A0A7G2E9B1 · UniProt P56790 · UniProt Q9XF89 · UniProt P04778 · UniProt Q07473 · UniProt Q39195
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