UniProt P83755
Photosystem II protein D1 (P83755)
Photosystem II protein D1 (UniProt P83755), EC 1.10.3.9: 4 experimental structures and 1 predicted model on GenesisL1, 13 ligands bound, 17 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P83755
- Protein
- Photosystem II protein D1
- EC
- 1.10.3.9
- Experimental structures
- 4
- Predicted models
- 1
- Ligands
- 13
- Pockets
- 17 · 2 records with a druggable one
Structures
5 records of P83755 in the MolNFT archive: 4 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5MDX | Cryo-EM structure of the PSII supercomplex from Arabidopsis thaliana | electron microscopy | A, a | FE2, CLA, PHO | — |
| 5MDX | Cryo-EM structure of the psii supercomplex from arabidopsis thaliana | electron microscopy | A, a | FE2, CLA, PHO | — |
| 7OUI | Structure of C2S2M2-type Photosystem supercomplex from Arabidopsis thaliana (digitonin-extracted) | electron microscopy | A, a | CLA, PHO, BCR, SQD, LMG, PL9 | 13 (best 0.86) |
| 7OUI | Structure of C2S2M2-type photosystem supercomplex from arabidopsis thaliana (digitonin-extracted) | electron microscopy | A, a | CLA, PHO, BCR, SQD, LMG, PL9 | — |
| P83755 | AlphaFold monomer V2.0 prediction for photosystem II protein D1 (P83755) | predicted | A | — | 4 (best 0.65) |
Ligands
- CLA · Chlorophyll A · in 4 records
- FE2 · Fe (II) ion · in 4 records
- PHO · Pheophytin A · in 4 records
- AJP · Digitonin · in 2 records
- BCR · Beta-carotene · in 2 records
- BCT · Bicarbonate ion · in 2 records
- CA · Calcium ion · in 2 records
- CL · Chloride ion · in 2 records
- DGD · Digalactosyl diacyl glycerol (dgdg) · in 2 records
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 2 records
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 2 records
- PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone · in 2 records
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 2 records
Experiment against prediction
- 7OUI chain A against the predicted model P83755: TM-score 0.99, RMSD 0.85 Å
- 7OUI chain A against the predicted model P83755: TM-score 0.99, RMSD 0.85 Å
- 5MDX chain a against the predicted model P83755: TM-score 0.97, RMSD 1.14 Å
- 5MDX chain a against the predicted model P83755: TM-score 0.97, RMSD 1.14 Å
- 5MDX chain A against the predicted model P83755: TM-score 0.97, RMSD 1.14 Å
- 5MDX chain A against the predicted model P83755: TM-score 0.97, RMSD 1.14 Å
Elsewhere
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.