MolNFT v1 · #183186 · protein
Structure of psii-I (psii with PSB27, PSB28, and PSB34)
7NHP: “Structure of psii-I (psii with PSB27, PSB28, and PSB34)”. Electron microscopy, 10 ligands (CLA, BCR, LMG). MolNFT v1 #183186 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7NHP
- Type
- protein
- Length
- 2,350 residues
- Chains
- 18
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A444, Q8DIQ1, Q8DIF8, Q8CM25, Q8DIP0, Q8DIN9, Q8DJ43, Q8DJZ6, Q9F1K9, Q8DIN8, Q8DHA7, Q8DIQ0, Q9F1R6, Q8DJI1, Q8DHJ2, Q8DG60, Q8DLJ8, Q8DMP8
- Ligands
- CLA, BCR, LMG, PHO, LHG, PL9, HEM, MN, FE, CL
Structure
electron microscopy · 18 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 335 | — | P0A444 |
| B | — | protein | 496 | — | Q8DIQ1 |
| C | — | protein | 432 | — | Q8DIF8 |
| D | — | protein | 341 | — | Q8CM25 |
| E | — | protein | 77 | — | Q8DIP0 |
| F | — | protein | 38 | — | Q8DIN9 |
| H | — | protein | 65 | — | Q8DJ43 |
| I | — | protein | 26 | — | Q8DJZ6 |
| K | — | protein | 37 | — | Q9F1K9 |
| L | — | protein | 37 | — | Q8DIN8 |
| M | — | protein | 34 | — | Q8DHA7 |
| T | — | protein | 28 | — | Q8DIQ0 |
| X | — | protein | 35 | — | Q9F1R6 |
| y | — | protein | 28 | — | Q8DJI1 |
| Z | — | protein | 60 | — | Q8DHJ2 |
| 1 | — | protein | 113 | — | Q8DG60 |
| 2 | — | protein | 112 | — | Q8DLJ8 |
| 3 | — | protein | 56 | — | Q8DMP8 |
Ligands and binding sites
- CLA · Chlorophyll A · ligand · 35 copies · chains A, D, T, I, B, H, 3, L, M, C, K, y, Z, X
- BCR · Beta-carotene · ligand · 10 copies · chains A, B, C, K, Z, D, F, H, X, y
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · ligand · 7 copies · chains C, Z, K, B, D, L, M, 3, F, A, T, I
- PHO · Pheophytin A · ligand · 2 copies · chains A, D
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · ligand · chains A, C, D
- PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone · ligand · chains A, D, L, T
- HEM · Protoporphyrin IX containing Fe · ligand · chains E, F
- MN · Manganese (II) ion · metal · chains A
- FE · Fe (III) ion · metal · chains A, D
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7NHP · Structure of PSII-I (PSII with Psb27, Psb28, and Psb34) · the same entry in another collection · chain M against M, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A444
- Every structure of UniProt Q8DIQ1
- Every structure of UniProt Q8DIF8
- Every structure of UniProt Q8CM25
- Every structure of UniProt Q8DIP0
- Every structure of UniProt Q8DIN9
- Every structure of UniProt Q8DJ43
- Every structure of UniProt Q8DJZ6
- Every structure of UniProt Q9F1K9
- Every structure of UniProt Q8DIN8
- Every structure of UniProt Q8DHA7
- Every structure of UniProt Q8DIQ0
- Every structure of UniProt Q9F1R6
- Every structure of UniProt Q8DJI1
- Every structure of UniProt Q8DHJ2
- Every structure of UniProt Q8DG60
- Every structure of UniProt Q8DLJ8
- Every structure of UniProt Q8DMP8
- Elsewhere: RCSB PDB 7NHP · PDBe 7NHP · UniProt P0A444 · UniProt Q8DIQ1 · UniProt Q8DIF8 · UniProt Q8CM25 · UniProt Q8DIP0 · UniProt Q8DIN9 · UniProt Q8DJ43 · UniProt Q8DJZ6 · UniProt Q9F1K9 · UniProt Q8DIN8 · UniProt Q8DHA7 · UniProt Q8DIQ0 · UniProt Q9F1R6 · UniProt Q8DJI1 · UniProt Q8DHJ2 · UniProt Q8DG60 · UniProt Q8DLJ8 · UniProt Q8DMP8
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