UniProt Q8DJZ6

Photosystem II reaction center protein I (Q8DJZ6)

Photosystem II reaction center protein I (UniProt Q8DJZ6): 81 experimental structures and 1 predicted model on GenesisL1, 10 ligands bound, 80 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…

UniProt: Q8DJZ6
Protein: Photosystem II reaction center protein I
Experimental structures: 81
Predicted models: 1
Ligands: 10
Pockets: 80 · 37 records with a druggable one

Structures

82 records of Q8DJZ6 in the MolNFT archive: 81 experimental, 1 predicted.

Entry	Title	Method	Chains	Ligands	Pockets
1S5L	Architecture of the photosynthetic oxygen evolving center	x-ray diffraction	I, i	—	—
1S5L	Architecture of the photosynthetic oxygen evolving center	x-ray diffraction	I, i	—	—
2AXT	Crystal Structure of Photosystem II from Thermosynechococcus elongatus	x-ray diffraction	I, i	—	—
2AXT	Crystal structure of photosystem II from thermosynechococcus elongatus	x-ray diffraction	I, i	—	—
3KZI	Crystal Structure of Monomeric Form of Cyanobacterial Photosystem II	x-ray diffraction	I	—	—
3KZI	Crystal structure of monomeric form of cyanobacterial photosystem II	x-ray diffraction	I	—	—
4FBY	fs X-ray diffraction of Photosystem II	x-ray diffraction	I, a	—	—
4FBY	Fs X-ray diffraction of photosystem II	x-ray diffraction	I, a	—	—
4IXQ	RT fs X-ray diffraction of Photosystem II, dark state	x-ray diffraction	I, i	—	—
4IXQ	Rt fs X-ray diffraction of photosystem II, dark state	x-ray diffraction	I, i	—	—
4IXR	RT fs X-ray diffraction of Photosystem II, first illuminated state	x-ray diffraction	I, i	—	—
4IXR	Rt fs X-ray diffraction of photosystem II, first illuminated state	x-ray diffraction	I, i	—	—
4PBU	Serial Time-resolved crystallography of Photosystem II using a femtosecond X-ray laser The S1 state	x-ray diffraction	I, i	—	—
4PBU	Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser the S1 state	x-ray diffraction	I, i	—	—
4PJ0	Structure of T.elongatus Photosystem II, rows of dimers crystal packing	x-ray diffraction	I, i	—	—
4PJ0	Structure of T.ELONGATUS photosystem II, rows of dimers crystal packing	x-ray diffraction	I, i	—	—
4RVY	Serial time resolved crystallography of photosystem II using a femtosecond X-ray laser. the S state…	x-ray diffraction	I, i	—	—
4TNH	RT XFEL structure of Photosystem II in the dark state at 4.9 A resolution	x-ray diffraction	I, i	—	—
4TNH	Rt xfel structure of photosystem II in the dark state at 4.9 a resolution	x-ray diffraction	I, i	—	—
4TNI	RT XFEL structure of Photosystem II 500 ms after the third illumination at 4.6 A resolution	x-ray diffraction	I, i	—	—
4TNI	Rt xfel structure of photosystem II 500 ms after the third illumination at 4.6 a resolution	x-ray diffraction	I, i	—	—
4TNJ	RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 4.5 A resolution	x-ray diffraction	I, i	—	—
4TNJ	Rt xfel structure of photosystem II 500 ms after the 2ND illumination (2F) at 4.5 a resolution	x-ray diffraction	I, i	—	—
4TNK	RT XFEL structure of Photosystem II 250 microsec after the third illumination at 5.2 A resolution	x-ray diffraction	I, i	—	—
4TNK	Rt xfel structure of photosystem II 250 microsec after the third illumination at 5.2 a resolution	x-ray diffraction	I, i	—	—
4V62	Crystal Structure of cyanobacterial Photosystem II	x-ray diffraction	AI, BI	—	—
4V82	Crystal structure of cyanobacterial Photosystem II in complex with terbutryn	x-ray diffraction	AI, BI	—	—
5E79	Macromolecular diffractive imaging using imperfect crystals	x-ray diffraction	I, i	CLA, BCR, LMG	—
5E79	Macromolecular diffractive imaging using imperfect crystals	x-ray diffraction	I, i	—	—
5E7C	Macromolecular diffractive imaging using imperfect crystals - bragg data	x-ray diffraction	I, i	—	—
5H2F	Crystal structure of the PsbM-deletion mutant of photosystem II	x-ray diffraction	I, i	CLA, BCR, LMG, UNL, LHG	2 (best 0.80)
5H2F	Crystal structure of the psbm-deletion mutant of photosystem II	x-ray diffraction	I, i	—	—
5KAF	RT XFEL structure of Photosystem II in the dark state at 3.0 A resolution	x-ray diffraction	I, i	CLA, BCR, LMG, SQD, UNL	1 (best 0.81)
5KAF	Rt xfel structure of photosystem II in the dark state at 3.0 a resolution	x-ray diffraction	I, i	CLA, BCR, LMG, SQD	—
5KAI	NH3-bound RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 2.8 A…	x-ray diffraction	I, i	CLA, BCR, LMG, UNL, SQD	2 (best 0.81)
5KAI	NH3-bound rt xfel structure of photosystem II 500 ms after the 2ND illumination (2F) at 2.8 a…	x-ray diffraction	I, i	CLA, BCR, LMG, UNL, SQD	—
5MX2	Photosystem II depleted of the Mn4CaO5 cluster at 2.55 A resolution	x-ray diffraction	I, i	CLA, BCR, LMG, LFA	—
5MX2	Photosystem II depleted of the MN4CAO5 cluster at 2.55 a resolution	x-ray diffraction	I, i	CLA, BCR, LMG, LFA	—
5TIS	Room temperature xfel structure of the native, doubly-illuminated photosystem II complex	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
5ZZN	Crystal structure of photosystem II from an SQDG-deficient mutant of Thermosynechococcus elongatus	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
5ZZN	Crystal structure of photosystem II from an sqdg-deficient mutant of thermosynechococcus elongatus	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
6DHE	RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.05 Angstrom…	x-ray diffraction	I, i	CLA, 8CT, LMG, DGD, UNL, BCR	2 (best 0.81)
6DHF	RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.08 Angstrom resolution	x-ray diffraction	I, i	CLA, BCR, DGD, LMG, UNL	3 (best 0.81)
6DHG	RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.5 Angstrom…	x-ray diffraction	I, i	CLA, BCR, DGD, LMG, UNL	2 (best 0.82)
6DHH	RT XFEL structure of Photosystem II 400 microseconds after the second illumination at 2.2 Angstrom…	x-ray diffraction	I, i	CLA, BCR, LMG, DGD, UNL	2 (best 0.81)
6DHO	RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.07 Angstrom resolution	x-ray diffraction	I, i	CLA, BCR, LMG, DGD, UNL	2 (best 0.82)
6DHP	RT XFEL structure of the three-flash state of Photosystem II (3F, S0-rich) at 2.04 Angstrom…	x-ray diffraction	I, i	CLA, BCR, LMG, DGD, UNL	3 (best 0.81)
6W1O	RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.08 Angstrom…	x-ray diffraction	I, i	CLA, BCR, LMG, DGD, STE	2 (best 0.81)
6W1P	RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom resolution	x-ray diffraction	I, i	CLA, BCR, DGD, LMG, STE	2 (best 0.81)
6W1Q	RT XFEL structure of Photosystem II 50 microseconds after the second illumination at 2.27 Angstrom…	x-ray diffraction	I, i	CLA, LMG, DGD, BCR, STE	3 (best 0.82)
6W1R	RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.23 Angstrom…	x-ray diffraction	I, i	CLA, BCR, DGD, LMG, STE	2 (best 0.81)
6W1T	RT XFEL structure of Photosystem II 250 microseconds after the second illumination at 2.01 Angstrom…	x-ray diffraction	I, i	CLA, BCR, LMG, DGD, STE	1 (best 0.81)
6W1U	RT XFEL structure of Photosystem II 400 microseconds after the second illumination at 2.09 Angstrom…	x-ray diffraction	I, i	CLA, BCR, LMG, DGD, STE	2 (best 0.81)
6W1V	RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.09 Angstrom resolution	x-ray diffraction	I, i	CLA, BCR, DGD, LMG, STE	2 (best 0.81)
7NHO	Structure of PSII-M	electron microscopy	I	CLA, BCR, LMG	3 (best 0.78)
7NHO	Structure of psii-M	electron microscopy	I	CLA, BCR, LMG	—
7NHP	Structure of PSII-I (PSII with Psb27, Psb28, and Psb34)	electron microscopy	I	CLA, BCR, LMG	—
7NHP	Structure of psii-I (psii with PSB27, PSB28, and PSB34)	electron microscopy	I	CLA, LMG	—
7NHQ	Structure of PSII-I prime (PSII with Psb28, and Psb34)	electron microscopy	I	CLA, BCR, LMG	1 (best 0.51)
7NHQ	Structure of psii-I prime (psii with PSB28, and PSB34)	electron microscopy	I	CLA, LMG	—

22 records more on the page itself.

Ligands

CLA · Chlorophyll A · in 51 records
LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 51 records
BCR · Beta-carotene · in 49 records
DGD · Digalactosyl diacyl glycerol (dgdg) · in 31 records
STE · Stearic acid · in 26 records
UNL · Unknown ligand · in 15 records
SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 4 records
LFA · Eicosane · in 2 records
8CT · (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene · in 1 record
LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 1 record

Experiment against prediction

4PJ0 chain I against the predicted model Q8DJZ6: TM-score 0.92, RMSD 0.44 Å
4PJ0 chain I against the predicted model Q8DJZ6: TM-score 0.92, RMSD 0.44 Å
5MX2 chain I against the predicted model Q8DJZ6: TM-score 0.90, RMSD 0.48 Å
5MX2 chain I against the predicted model Q8DJZ6: TM-score 0.90, RMSD 0.48 Å
5H2F chain I against the predicted model Q8DJZ6: TM-score 0.88, RMSD 1.17 Å
5H2F chain I against the predicted model Q8DJZ6: TM-score 0.88, RMSD 1.17 Å
6DHF chain I against the predicted model Q8DJZ6: TM-score 0.88, RMSD 1.12 Å
8F4E chain I against the predicted model Q8DJZ6: TM-score 0.88, RMSD 1.10 Å
6DHO chain I against the predicted model Q8DJZ6: TM-score 0.88, RMSD 1.13 Å
8F4K chain I against the predicted model Q8DJZ6: TM-score 0.88, RMSD 1.13 Å

Elsewhere

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