UniProt Q8DIN9
Cytochrome b559 subunit beta (Q8DIN9)
Cytochrome b559 subunit beta (UniProt Q8DIN9): 81 experimental structures and 1 predicted model on GenesisL1, 15 ligands bound, 81 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q8DIN9
- Protein
- Cytochrome b559 subunit beta
- Experimental structures
- 81
- Predicted models
- 1
- Ligands
- 15
- Pockets
- 81 · 40 records with a druggable one
Structures
82 records of Q8DIN9 in the MolNFT archive: 81 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1S5L | Architecture of the photosynthetic oxygen evolving center | x-ray diffraction | F, f | — | — |
| 1S5L | Architecture of the photosynthetic oxygen evolving center | x-ray diffraction | F, f | — | — |
| 2AXT | Crystal Structure of Photosystem II from Thermosynechococcus elongatus | x-ray diffraction | F, f | — | — |
| 2AXT | Crystal structure of photosystem II from thermosynechococcus elongatus | x-ray diffraction | F, f | — | — |
| 3KZI | Crystal Structure of Monomeric Form of Cyanobacterial Photosystem II | x-ray diffraction | F | — | — |
| 3KZI | Crystal structure of monomeric form of cyanobacterial photosystem II | x-ray diffraction | F | — | — |
| 4FBY | fs X-ray diffraction of Photosystem II | x-ray diffraction | F, S | — | — |
| 4FBY | Fs X-ray diffraction of photosystem II | x-ray diffraction | F, S | — | — |
| 4IXQ | RT fs X-ray diffraction of Photosystem II, dark state | x-ray diffraction | F, f | — | — |
| 4IXQ | Rt fs X-ray diffraction of photosystem II, dark state | x-ray diffraction | F, f | — | — |
| 4IXR | RT fs X-ray diffraction of Photosystem II, first illuminated state | x-ray diffraction | F, f | — | — |
| 4IXR | Rt fs X-ray diffraction of photosystem II, first illuminated state | x-ray diffraction | F, f | — | — |
| 4PBU | Serial Time-resolved crystallography of Photosystem II using a femtosecond X-ray laser The S1 state | x-ray diffraction | F, f | — | — |
| 4PBU | Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser the S1 state | x-ray diffraction | F, f | — | — |
| 4PJ0 | Structure of T.elongatus Photosystem II, rows of dimers crystal packing | x-ray diffraction | F, f | — | — |
| 4PJ0 | Structure of T.ELONGATUS photosystem II, rows of dimers crystal packing | x-ray diffraction | F, f | — | — |
| 4RVY | Serial time resolved crystallography of photosystem II using a femtosecond X-ray laser. the S state… | x-ray diffraction | F, f | — | — |
| 4TNH | RT XFEL structure of Photosystem II in the dark state at 4.9 A resolution | x-ray diffraction | F, f | — | — |
| 4TNH | Rt xfel structure of photosystem II in the dark state at 4.9 a resolution | x-ray diffraction | F, f | — | — |
| 4TNI | RT XFEL structure of Photosystem II 500 ms after the third illumination at 4.6 A resolution | x-ray diffraction | F, f | — | — |
| 4TNI | Rt xfel structure of photosystem II 500 ms after the third illumination at 4.6 a resolution | x-ray diffraction | F, f | — | — |
| 4TNJ | RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 4.5 A resolution | x-ray diffraction | F, f | — | — |
| 4TNJ | Rt xfel structure of photosystem II 500 ms after the 2ND illumination (2F) at 4.5 a resolution | x-ray diffraction | F, f | — | — |
| 4TNK | RT XFEL structure of Photosystem II 250 microsec after the third illumination at 5.2 A resolution | x-ray diffraction | F, f | — | — |
| 4TNK | Rt xfel structure of photosystem II 250 microsec after the third illumination at 5.2 a resolution | x-ray diffraction | F, f | — | — |
| 4V62 | Crystal Structure of cyanobacterial Photosystem II | x-ray diffraction | AF, BF | — | — |
| 4V82 | Crystal structure of cyanobacterial Photosystem II in complex with terbutryn | x-ray diffraction | AF, BF | — | — |
| 5E79 | Macromolecular diffractive imaging using imperfect crystals | x-ray diffraction | F, f | CLA, PL9, LMG, LHG, HEM, BCR | 1 (best 0.76) |
| 5E79 | Macromolecular diffractive imaging using imperfect crystals | x-ray diffraction | F, f | — | — |
| 5E7C | Macromolecular diffractive imaging using imperfect crystals - bragg data | x-ray diffraction | F, f | — | — |
| 5H2F | Crystal structure of the PsbM-deletion mutant of photosystem II | x-ray diffraction | F, f | PL9, BCR, DGD, SQD, HEM, LMG | 2 (best 0.83) |
| 5H2F | Crystal structure of the psbm-deletion mutant of photosystem II | x-ray diffraction | F, f | — | — |
| 5KAF | RT XFEL structure of Photosystem II in the dark state at 3.0 A resolution | x-ray diffraction | F, f | PL9, LHG, BCR, LMG, SQD, HEM | 2 (best 0.78) |
| 5KAF | Rt xfel structure of photosystem II in the dark state at 3.0 a resolution | x-ray diffraction | F, f | PL9, LHG, BCR, LMG, SQD, HEM | — |
| 5KAI | NH3-bound RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 2.8 A… | x-ray diffraction | F, f | PL9, BCR, LMG, SQD, LHG, HEM | 2 (best 0.79) |
| 5KAI | NH3-bound rt xfel structure of photosystem II 500 ms after the 2ND illumination (2F) at 2.8 a… | x-ray diffraction | F, f | PL9, BCR, LMG, SQD, HEM | — |
| 5MX2 | Photosystem II depleted of the Mn4CaO5 cluster at 2.55 A resolution | x-ray diffraction | F, f | PL9, BCR, LMG, SQD, LHG, HEM | — |
| 5MX2 | Photosystem II depleted of the MN4CAO5 cluster at 2.55 a resolution | x-ray diffraction | F, f | PL9, BCR, LMG, SQD, LHG, HEM | — |
| 5TIS | Room temperature xfel structure of the native, doubly-illuminated photosystem II complex | x-ray diffraction | F, f | PL9, BCR, LMG, SQD, HEM | — |
| 5ZZN | Crystal structure of photosystem II from an SQDG-deficient mutant of Thermosynechococcus elongatus | x-ray diffraction | F, f | CLA, PL9, BCR, DGD, LMG, LHG | 3 (best 0.78) |
| 5ZZN | Crystal structure of photosystem II from an sqdg-deficient mutant of thermosynechococcus elongatus | x-ray diffraction | F, f | PL9, BCR, LMG, LHG, UNL, HEM | — |
| 6DHE | RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.05 Angstrom… | x-ray diffraction | F, f | PL9, 8CT, LMG, SQD, LHG, HEM | 2 (best 0.77) |
| 6DHF | RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.08 Angstrom resolution | x-ray diffraction | F, f | PL9, BCR, LMG, LHG, UNL, SQD | 2 (best 0.77) |
| 6DHG | RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.5 Angstrom… | x-ray diffraction | F, f | PL9, BCR, LMG, LHG, HEM, SQD | 3 (best 0.78) |
| 6DHH | RT XFEL structure of Photosystem II 400 microseconds after the second illumination at 2.2 Angstrom… | x-ray diffraction | F, f | PL9, BCR, LMG, LHG, HEM, SQD | 3 (best 0.78) |
| 6DHO | RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.07 Angstrom resolution | x-ray diffraction | F, f | PL9, LHG, BCR, LMG, HEM, UNL | 2 (best 0.78) |
| 6DHP | RT XFEL structure of the three-flash state of Photosystem II (3F, S0-rich) at 2.04 Angstrom… | x-ray diffraction | F, f | PL9, LHG, BCR, LMG, UNL, SQD | 2 (best 0.76) |
| 6W1O | RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.08 Angstrom… | x-ray diffraction | F, f | PL9, LMG, SQD, LHG, BCR, HEC | 2 (best 0.78) |
| 6W1P | RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom resolution | x-ray diffraction | F, f | CLA, PL9, LHG, BCR, LMG, HEC | 1 (best 0.77) |
| 6W1Q | RT XFEL structure of Photosystem II 50 microseconds after the second illumination at 2.27 Angstrom… | x-ray diffraction | F, f | PL9, LHG, BCR, LMG, SQD, HEC | 1 (best 0.77) |
| 6W1R | RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.23 Angstrom… | x-ray diffraction | F, f | PL9, LHG, BCR, LMG, HEC, SQD | — |
| 6W1T | RT XFEL structure of Photosystem II 250 microseconds after the second illumination at 2.01 Angstrom… | x-ray diffraction | F, f | PL9, BCR, LMG, SQD, LHG, HEC | 1 (best 0.77) |
| 6W1U | RT XFEL structure of Photosystem II 400 microseconds after the second illumination at 2.09 Angstrom… | x-ray diffraction | F, f | PL9, BCR, LMG, SQD, LHG, STE | 1 (best 0.74) |
| 6W1V | RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.09 Angstrom resolution | x-ray diffraction | F, f | CLA, PL9, LHG, BCR, LMG, SQD | 1 (best 0.75) |
| 7NHO | Structure of PSII-M | electron microscopy | F | LMG, HEM, BCR | 2 (best 0.60) |
| 7NHO | Structure of psii-M | electron microscopy | F | LMG, HEM, BCR | — |
| 7NHP | Structure of PSII-I (PSII with Psb27, Psb28, and Psb34) | electron microscopy | F | LMG, BCR, HEM | 1 (best 0.69) |
| 7NHP | Structure of psii-I (psii with PSB27, PSB28, and PSB34) | electron microscopy | F | LMG, BCR, HEM | — |
| 7NHQ | Structure of PSII-I prime (PSII with Psb28, and Psb34) | electron microscopy | F | HEM, LMG, BCR | 1 (best 0.58) |
| 7NHQ | Structure of psii-I prime (psii with PSB28, and PSB34) | electron microscopy | F | HEM, LMG, BCR | — |
22 records more on the page itself.
Ligands
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 51 records
- BCR · Beta-carotene · in 50 records
- PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone · in 45 records
- HEM · Protoporphyrin IX containing Fe · in 44 records
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 43 records
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 41 records
- CLA · Chlorophyll A · in 29 records
- STE · Stearic acid · in 15 records
- HEC · Heme C · in 7 records
- UNL · Unknown ligand · in 7 records
- DGD · Digalactosyl diacyl glycerol (dgdg) · in 5 records
- MG · Magnesium ion · in 5 records
- CA · Calcium ion · in 3 records
- NA · Sodium ion · in 2 records
- 8CT · (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene · in 1 record
Experiment against prediction
- 5H2F chain f against the predicted model Q8DIN9: TM-score 0.88, RMSD 0.80 Å
- 5H2F chain f against the predicted model Q8DIN9: TM-score 0.88, RMSD 0.80 Å
- 7YQ2 chain f against the predicted model Q8DIN9: TM-score 0.87, RMSD 0.81 Å
- 7YQ7 chain f against the predicted model Q8DIN9: TM-score 0.87, RMSD 0.85 Å
- 4PBU chain f against the predicted model Q8DIN9: TM-score 0.86, RMSD 0.88 Å
- 4PBU chain f against the predicted model Q8DIN9: TM-score 0.86, RMSD 0.88 Å
- 5ZZN chain f against the predicted model Q8DIN9: TM-score 0.85, RMSD 0.92 Å
- 5ZZN chain f against the predicted model Q8DIN9: TM-score 0.85, RMSD 0.92 Å
- 4PJ0 chain F against the predicted model Q8DIN9: TM-score 0.82, RMSD 0.73 Å
- 4PJ0 chain F against the predicted model Q8DIN9: TM-score 0.82, RMSD 0.73 Å
Elsewhere
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