UniProt Q8DHJ2
Photosystem II reaction center protein Z (Q8DHJ2)
Photosystem II reaction center protein Z (UniProt Q8DHJ2): 48 experimental structures and 1 predicted model on GenesisL1, 5 ligands bound, 16 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- Q8DHJ2
- Protein
- Photosystem II reaction center protein Z
- Experimental structures
- 48
- Predicted models
- 1
- Ligands
- 5
- Pockets
- 16 · 8 records with a druggable one
Structures
49 records of Q8DHJ2 in the MolNFT archive: 48 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1S5L | Architecture of the photosynthetic oxygen evolving center | x-ray diffraction | Z, z | — | — |
| 1S5L | Architecture of the photosynthetic oxygen evolving center | x-ray diffraction | Z, z | — | — |
| 2AXT | Crystal Structure of Photosystem II from Thermosynechococcus elongatus | x-ray diffraction | Z, z | — | — |
| 2AXT | Crystal structure of photosystem II from thermosynechococcus elongatus | x-ray diffraction | Z, z | — | — |
| 3KZI | Crystal Structure of Monomeric Form of Cyanobacterial Photosystem II | x-ray diffraction | Z | — | — |
| 3KZI | Crystal structure of monomeric form of cyanobacterial photosystem II | x-ray diffraction | Z | — | — |
| 4FBY | fs X-ray diffraction of Photosystem II | x-ray diffraction | Z, l | — | — |
| 4FBY | Fs X-ray diffraction of photosystem II | x-ray diffraction | Z, l | — | — |
| 4IXQ | RT fs X-ray diffraction of Photosystem II, dark state | x-ray diffraction | Z, z | — | — |
| 4IXQ | Rt fs X-ray diffraction of photosystem II, dark state | x-ray diffraction | Z, z | — | — |
| 4IXR | RT fs X-ray diffraction of Photosystem II, first illuminated state | x-ray diffraction | Z, z | — | — |
| 4IXR | Rt fs X-ray diffraction of photosystem II, first illuminated state | x-ray diffraction | Z, z | — | — |
| 4PBU | Serial Time-resolved crystallography of Photosystem II using a femtosecond X-ray laser The S1 state | x-ray diffraction | Z, z | — | — |
| 4PBU | Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser the S1 state | x-ray diffraction | Z, z | — | — |
| 4PJ0 | Structure of T.elongatus Photosystem II, rows of dimers crystal packing | x-ray diffraction | Z, z | — | — |
| 4PJ0 | Structure of T.ELONGATUS photosystem II, rows of dimers crystal packing | x-ray diffraction | Z, z | — | — |
| 4RVY | Serial time resolved crystallography of photosystem II using a femtosecond X-ray laser. the S state… | x-ray diffraction | Z, z | — | — |
| 4TNH | RT XFEL structure of Photosystem II in the dark state at 4.9 A resolution | x-ray diffraction | Z, z | — | — |
| 4TNH | Rt xfel structure of photosystem II in the dark state at 4.9 a resolution | x-ray diffraction | Z, z | — | — |
| 4TNI | RT XFEL structure of Photosystem II 500 ms after the third illumination at 4.6 A resolution | x-ray diffraction | Z, z | — | — |
| 4TNI | Rt xfel structure of photosystem II 500 ms after the third illumination at 4.6 a resolution | x-ray diffraction | Z, z | — | — |
| 4TNJ | RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 4.5 A resolution | x-ray diffraction | Z, z | — | — |
| 4TNJ | Rt xfel structure of photosystem II 500 ms after the 2ND illumination (2F) at 4.5 a resolution | x-ray diffraction | Z, z | — | — |
| 4TNK | RT XFEL structure of Photosystem II 250 microsec after the third illumination at 5.2 A resolution | x-ray diffraction | Z, z | — | — |
| 4TNK | Rt xfel structure of photosystem II 250 microsec after the third illumination at 5.2 a resolution | x-ray diffraction | Z, z | — | — |
| 4V62 | Crystal Structure of cyanobacterial Photosystem II | x-ray diffraction | AZ, BZ | — | — |
| 4V82 | Crystal structure of cyanobacterial Photosystem II in complex with terbutryn | x-ray diffraction | AZ, BZ | — | — |
| 5E79 | Macromolecular diffractive imaging using imperfect crystals | x-ray diffraction | Z, z | — | — |
| 5E7C | Macromolecular diffractive imaging using imperfect crystals - bragg data | x-ray diffraction | Z, z | — | — |
| 5H2F | Crystal structure of the psbm-deletion mutant of photosystem II | x-ray diffraction | Z, z | — | — |
| 5KAF | RT XFEL structure of Photosystem II in the dark state at 3.0 A resolution | x-ray diffraction | Z, z | CLA, BCR, UNL | 2 (best 0.87) |
| 5KAF | Rt xfel structure of photosystem II in the dark state at 3.0 a resolution | x-ray diffraction | Z, z | CLA, BCR, UNL | — |
| 5KAI | NH3-bound rt xfel structure of photosystem II 500 ms after the 2ND illumination (2F) at 2.8 a… | x-ray diffraction | Z, z | CLA, BCR, UNL | — |
| 5MX2 | Photosystem II depleted of the Mn4CaO5 cluster at 2.55 A resolution | x-ray diffraction | Z, z | CLA, BCR | — |
| 5MX2 | Photosystem II depleted of the MN4CAO5 cluster at 2.55 a resolution | x-ray diffraction | Z, z | CLA, BCR | — |
| 5TIS | Room temperature xfel structure of the native, doubly-illuminated photosystem II complex | x-ray diffraction | Z, z | CLA, BCR, UNL | — |
| 5ZZN | Crystal structure of photosystem II from an sqdg-deficient mutant of thermosynechococcus elongatus | x-ray diffraction | Z, z | CLA, LMG, BCR, UNL | — |
| 6DHP | RT XFEL structure of the three-flash state of Photosystem II (3F, S0-rich) at 2.04 Angstrom… | x-ray diffraction | Z, z | CLA, BCR | 2 (best 0.86) |
| 6W1P | RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom resolution | x-ray diffraction | Z, z | BCR, CLA, STE | 2 (best 0.87) |
| 6W1R | RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.23 Angstrom… | x-ray diffraction | Z, z | CLA, BCR, STE | 2 (best 0.86) |
| 7NHO | Structure of psii-M | electron microscopy | Z | LMG, CLA, BCR | — |
| 7NHP | Structure of psii-I (psii with PSB27, PSB28, and PSB34) | electron microscopy | Z | LMG, CLA, BCR | — |
| 7NHQ | Structure of psii-I prime (psii with PSB28, and PSB34) | electron microscopy | Z | LMG, CLA, BCR | — |
| 7RF5 | RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.23 Angstrom… | x-ray diffraction | Z, z | CLA, BCR, STE | — |
| 7RF8 | RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.09 Angstrom resolution | x-ray diffraction | Z, z | CLA, BCR, STE | 2 (best 0.87) |
| 7YQ2 | Crystal structure of photosystem II expressing psbA2 gene only | x-ray diffraction | Z, z | CLA, BCR, LMG, UNL | 2 (best 0.87) |
| 7YQ7 | Crystal structure of photosystem II expressing psbA3 gene only | x-ray diffraction | Z, z | CLA, BCR, LMG, UNL | 2 (best 0.87) |
| 8F4H | RT XFEL structure of Photosystem II 1200 microseconds after the third illumination at 2.10 Angstrom… | x-ray diffraction | Z, z | CLA, BCR | 2 (best 0.87) |
| Q8DHJ2 | AlphaFold monomer V2.0 prediction for photosystem II reaction center protein Z (Q8DHJ2) | predicted | A | — | — |
Ligands
Experiment against prediction
- 7RF8 chain z against the predicted model Q8DHJ2: TM-score 0.95, RMSD 0.75 Å
- 6W1P chain z against the predicted model Q8DHJ2: TM-score 0.95, RMSD 0.77 Å
- 8F4H chain z against the predicted model Q8DHJ2: TM-score 0.95, RMSD 0.76 Å
- 6W1R chain z against the predicted model Q8DHJ2: TM-score 0.95, RMSD 0.78 Å
- 7YQ2 chain z against the predicted model Q8DHJ2: TM-score 0.95, RMSD 0.78 Å
- 7YQ2 chain Z against the predicted model Q8DHJ2: TM-score 0.94, RMSD 0.76 Å
- 5ZZN chain Z against the predicted model Q8DHJ2: TM-score 0.94, RMSD 0.78 Å
- 5H2F chain z against the predicted model Q8DHJ2: TM-score 0.94, RMSD 0.73 Å
- 7YQ7 chain Z against the predicted model Q8DHJ2: TM-score 0.93, RMSD 0.81 Å
- 7NHQ chain Z against the predicted model Q8DHJ2: TM-score 0.93, RMSD 0.73 Å
Elsewhere
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