UniProt Q8DIF8
Photosystem II CP43 reaction center protein (Q8DIF8)
Photosystem II CP43 reaction center protein (UniProt Q8DIF8): 52 experimental structures and 1 predicted model on GenesisL1, 15 ligands bound, 144 pockets. Binding sites, druggability and experiment against prediction (TM-score)…
- UniProt
- Q8DIF8
- Protein
- Photosystem II CP43 reaction center protein
- Experimental structures
- 52
- Predicted models
- 1
- Ligands
- 15
- Pockets
- 144 · 13 records with a druggable one
Structures
53 records of Q8DIF8 in the MolNFT archive: 52 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1S5L | Architecture of the photosynthetic oxygen evolving center | x-ray diffraction | C, c | — | — |
| 1S5L | Architecture of the photosynthetic oxygen evolving center | x-ray diffraction | C, c | — | — |
| 1W5C | Photosystem II from Thermosynechococcus elongatus | x-ray diffraction | C, I | — | — |
| 1W5C | Photosystem II from thermosynechococcus elongatus | x-ray diffraction | C, I | — | — |
| 3KZI | Crystal Structure of Monomeric Form of Cyanobacterial Photosystem II | x-ray diffraction | C | — | — |
| 3KZI | Crystal structure of monomeric form of cyanobacterial photosystem II | x-ray diffraction | C | — | — |
| 4FBY | fs X-ray diffraction of Photosystem II | x-ray diffraction | C, P | — | — |
| 4FBY | Fs X-ray diffraction of photosystem II | x-ray diffraction | C, P | — | — |
| 4IXQ | RT fs X-ray diffraction of Photosystem II, dark state | x-ray diffraction | C, c | — | — |
| 4IXQ | Rt fs X-ray diffraction of photosystem II, dark state | x-ray diffraction | C, c | — | — |
| 4IXR | RT fs X-ray diffraction of Photosystem II, first illuminated state | x-ray diffraction | C, c | — | — |
| 4IXR | Rt fs X-ray diffraction of photosystem II, first illuminated state | x-ray diffraction | C, c | — | — |
| 4PBU | Serial Time-resolved crystallography of Photosystem II using a femtosecond X-ray laser The S1 state | x-ray diffraction | C, c | — | — |
| 4PBU | Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser the S1 state | x-ray diffraction | C, c | — | — |
| 4PJ0 | Structure of T.elongatus Photosystem II, rows of dimers crystal packing | x-ray diffraction | C, c | — | — |
| 4PJ0 | Structure of T.ELONGATUS photosystem II, rows of dimers crystal packing | x-ray diffraction | C, c | — | — |
| 4RVY | Serial time resolved crystallography of photosystem II using a femtosecond X-ray laser. the S state… | x-ray diffraction | C, c | — | — |
| 4TNH | RT XFEL structure of Photosystem II in the dark state at 4.9 A resolution | x-ray diffraction | C, c | — | — |
| 4TNH | Rt xfel structure of photosystem II in the dark state at 4.9 a resolution | x-ray diffraction | C, c | — | — |
| 4TNI | RT XFEL structure of Photosystem II 500 ms after the third illumination at 4.6 A resolution | x-ray diffraction | C, c | — | — |
| 4TNI | Rt xfel structure of photosystem II 500 ms after the third illumination at 4.6 a resolution | x-ray diffraction | C, c | — | — |
| 4TNJ | RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 4.5 A resolution | x-ray diffraction | C, c | — | — |
| 4TNJ | Rt xfel structure of photosystem II 500 ms after the 2ND illumination (2F) at 4.5 a resolution | x-ray diffraction | C, c | — | — |
| 4TNK | RT XFEL structure of Photosystem II 250 microsec after the third illumination at 5.2 A resolution | x-ray diffraction | C, c | — | — |
| 4TNK | Rt xfel structure of photosystem II 250 microsec after the third illumination at 5.2 a resolution | x-ray diffraction | C, c | — | — |
| 4V62 | Crystal Structure of cyanobacterial Photosystem II | x-ray diffraction | AC, BC | — | — |
| 4V82 | Crystal structure of cyanobacterial Photosystem II in complex with terbutryn | x-ray diffraction | AC, BC | — | — |
| 5E79 | Macromolecular diffractive imaging using imperfect crystals | x-ray diffraction | C, c | — | — |
| 5E7C | Macromolecular diffractive imaging using imperfect crystals - bragg data | x-ray diffraction | C, c | — | — |
| 5H2F | Crystal structure of the PsbM-deletion mutant of photosystem II | x-ray diffraction | C, c | OEX, CL, LMG, SQD, CLA, BCR | 11 (best 0.86) |
| 5H2F | Crystal structure of the psbm-deletion mutant of photosystem II | x-ray diffraction | C, c | — | — |
| 5KAF | RT XFEL structure of Photosystem II in the dark state at 3.0 A resolution | x-ray diffraction | C, c | OEX, SQD, CL, LMG, LHG, CLA | 11 (best 0.87) |
| 5KAF | Rt xfel structure of photosystem II in the dark state at 3.0 a resolution | x-ray diffraction | C, c | OEX, SQD, CL, LMG, LHG, CLA | — |
| 5KAI | NH3-bound RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 2.8 A… | x-ray diffraction | C, c | OEX, CL, SQD, LMG, CLA, BCR | 12 (best 0.87) |
| 5KAI | NH3-bound rt xfel structure of photosystem II 500 ms after the 2ND illumination (2F) at 2.8 a… | x-ray diffraction | C, c | OEX, CL, SQD, LMG, CLA, BCR | — |
| 5MX2 | Photosystem II depleted of the Mn4CaO5 cluster at 2.55 A resolution | x-ray diffraction | C, c | CL, SQD, LMG, CLA, BCR, DGD | — |
| 5MX2 | Photosystem II depleted of the MN4CAO5 cluster at 2.55 a resolution | x-ray diffraction | C, c | CL, SQD, LMG, CLA, BCR, DGD | — |
| 5TIS | Room temperature xfel structure of the native, doubly-illuminated photosystem II complex | x-ray diffraction | C, c | OEX, CL, SQD, LHG, LMG, CLA | — |
| 5ZZN | Crystal structure of photosystem II from an sqdg-deficient mutant of thermosynechococcus elongatus | x-ray diffraction | C, c | OEX, CL, LMG, UNL, CLA, BCR | — |
| 6DHP | RT XFEL structure of the three-flash state of Photosystem II (3F, S0-rich) at 2.04 Angstrom… | x-ray diffraction | C, c | OEX, CL, LMG, SQD, OEY, CLA | 11 (best 0.86) |
| 6W1O | RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.08 Angstrom… | x-ray diffraction | C, c | CL, LMG, SQD, OEX, CLA, BCR | 12 (best 0.86) |
| 6W1P | RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom resolution | x-ray diffraction | C, c | CL, LHG, SQD, OEX, BCR, CLA | 12 (best 0.87) |
| 6W1R | RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.23 Angstrom… | x-ray diffraction | C, c | CL, LHG, SQD, OEX, OEY, CLA | 12 (best 0.86) |
| 7NHO | Structure of psii-M | electron microscopy | C | LHG, LMG, CLA, BCR | — |
| 7NHP | Structure of psii-I (psii with PSB27, PSB28, and PSB34) | electron microscopy | C | LHG, LMG, CLA, BCR | — |
| 7NHQ | Structure of psii-I prime (psii with PSB28, and PSB34) | electron microscopy | C | MN, CLA, LHG, LMG, BCR | — |
| 7RF1 | RT XFEL structure of Photosystem II averaged across all S-states at 1.89 Angstrom resolution | x-ray diffraction | C, c | CL, LMG, SQD, OEX, CLA, BCR | 12 (best 0.86) |
| 7RF5 | RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.23 Angstrom… | x-ray diffraction | C, c | OEY, OEX, CL, SQD, CLA, BCR | — |
| 7RF8 | RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.09 Angstrom resolution | x-ray diffraction | C, c | CL, LMG, SQD, OEY, OEX, CLA | 12 (best 0.87) |
| 7YQ2 | Crystal structure of photosystem II expressing psbA2 gene only | x-ray diffraction | C, c | OEX, CL, SQD, LMG, CLA, BCR | 11 (best 0.87) |
| 7YQ7 | Crystal structure of photosystem II expressing psbA3 gene only | x-ray diffraction | C, c | OEX, CL, SQD, LMG, CLA, BCR | 11 (best 0.87) |
| 8F4H | RT XFEL structure of Photosystem II 1200 microseconds after the third illumination at 2.10 Angstrom… | x-ray diffraction | C, c | OEY, OEX, CL, LMG, LHG, SQD | 12 (best 0.87) |
| Q8DIF8 | AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center protein (Q8DIF8) | predicted | A | — | 5 (best 0.64) |
Ligands
- BCR · Beta-carotene · in 22 records
- CLA · Chlorophyll A · in 22 records
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 22 records
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 22 records
- CL · Chloride ion · in 19 records
- DGD · Digalactosyl diacyl glycerol (dgdg) · in 19 records
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 18 records
- OEX · Ca-MN4-O5 cluster · in 17 records
- HEC · Heme C · in 12 records
- UNL · Unknown ligand · in 10 records
- STE · Stearic acid · in 7 records
- OEY · Ca-MN4-O6 cluster · in 5 records
- CA · Calcium ion · in 4 records
- LFA · Eicosane · in 2 records
- MN · Manganese (II) ion · in 1 record
Experiment against prediction
- 8F4H chain C against the predicted model Q8DIF8: TM-score 1.00, RMSD 0.31 Å
- 7RF8 chain C against the predicted model Q8DIF8: TM-score 1.00, RMSD 0.33 Å
- 7RF1 chain C against the predicted model Q8DIF8: TM-score 1.00, RMSD 0.33 Å
- 6W1O chain c against the predicted model Q8DIF8: TM-score 1.00, RMSD 0.34 Å
- 8F4H chain c against the predicted model Q8DIF8: TM-score 1.00, RMSD 0.34 Å
- 7RF1 chain c against the predicted model Q8DIF8: TM-score 1.00, RMSD 0.34 Å
- 7RF5 chain C against the predicted model Q8DIF8: TM-score 1.00, RMSD 0.34 Å
- 7YQ7 chain C against the predicted model Q8DIF8: TM-score 1.00, RMSD 0.34 Å
- 6W1P chain C against the predicted model Q8DIF8: TM-score 1.00, RMSD 0.34 Å
- 6W1O chain C against the predicted model Q8DIF8: TM-score 1.00, RMSD 0.34 Å
Elsewhere
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