UniProt Q8CM25
Photosystem II D2 protein (Q8CM25)
Photosystem II D2 protein (UniProt Q8CM25), EC 1.10.3.9: 76 experimental structures and 1 predicted model on GenesisL1, 16 ligands bound, 450 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- Q8CM25
- Protein
- Photosystem II D2 protein
- EC
- 1.10.3.9
- Experimental structures
- 76
- Predicted models
- 1
- Ligands
- 16
- Pockets
- 450 · 37 records with a druggable one
Structures
77 records of Q8CM25 in the MolNFT archive: 76 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1S5L | Architecture of the photosynthetic oxygen evolving center | x-ray diffraction | D, d | — | — |
| 1S5L | Architecture of the photosynthetic oxygen evolving center | x-ray diffraction | D, d | — | — |
| 1W5C | Photosystem II from Thermosynechococcus elongatus | x-ray diffraction | D, J | — | — |
| 1W5C | Photosystem II from thermosynechococcus elongatus | x-ray diffraction | D, J | — | — |
| 3KZI | Crystal Structure of Monomeric Form of Cyanobacterial Photosystem II | x-ray diffraction | D | — | — |
| 3KZI | Crystal structure of monomeric form of cyanobacterial photosystem II | x-ray diffraction | D | — | — |
| 4FBY | fs X-ray diffraction of Photosystem II | x-ray diffraction | D, Q | — | — |
| 4FBY | Fs X-ray diffraction of photosystem II | x-ray diffraction | D, Q | — | — |
| 4IXQ | RT fs X-ray diffraction of Photosystem II, dark state | x-ray diffraction | D, d | — | — |
| 4IXQ | Rt fs X-ray diffraction of photosystem II, dark state | x-ray diffraction | D, d | — | — |
| 4IXR | RT fs X-ray diffraction of Photosystem II, first illuminated state | x-ray diffraction | D, d | — | — |
| 4IXR | Rt fs X-ray diffraction of photosystem II, first illuminated state | x-ray diffraction | D, d | — | — |
| 4PBU | Serial Time-resolved crystallography of Photosystem II using a femtosecond X-ray laser The S1 state | x-ray diffraction | D, d | — | — |
| 4PBU | Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser the S1 state | x-ray diffraction | D, d | — | — |
| 4PJ0 | Structure of T.elongatus Photosystem II, rows of dimers crystal packing | x-ray diffraction | D, d | — | — |
| 4PJ0 | Structure of T.ELONGATUS photosystem II, rows of dimers crystal packing | x-ray diffraction | D, d | — | — |
| 4RVY | Serial time resolved crystallography of photosystem II using a femtosecond X-ray laser. the S state… | x-ray diffraction | D, d | — | — |
| 4TNH | RT XFEL structure of Photosystem II in the dark state at 4.9 A resolution | x-ray diffraction | D, d | — | — |
| 4TNH | Rt xfel structure of photosystem II in the dark state at 4.9 a resolution | x-ray diffraction | D, d | — | — |
| 4TNI | RT XFEL structure of Photosystem II 500 ms after the third illumination at 4.6 A resolution | x-ray diffraction | D, d | — | — |
| 4TNI | Rt xfel structure of photosystem II 500 ms after the third illumination at 4.6 a resolution | x-ray diffraction | D, d | — | — |
| 4TNJ | RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 4.5 A resolution | x-ray diffraction | D, d | — | — |
| 4TNJ | Rt xfel structure of photosystem II 500 ms after the 2ND illumination (2F) at 4.5 a resolution | x-ray diffraction | D, d | — | — |
| 4TNK | RT XFEL structure of Photosystem II 250 microsec after the third illumination at 5.2 A resolution | x-ray diffraction | D, d | — | — |
| 4TNK | Rt xfel structure of photosystem II 250 microsec after the third illumination at 5.2 a resolution | x-ray diffraction | D, d | — | — |
| 4V62 | Crystal Structure of cyanobacterial Photosystem II | x-ray diffraction | AD, BD | — | — |
| 4V82 | Crystal structure of cyanobacterial Photosystem II in complex with terbutryn | x-ray diffraction | AD, BD | — | — |
| 5E79 | Macromolecular diffractive imaging using imperfect crystals | x-ray diffraction | D, d | FE2, CL, BCT, CLA, PHO, PL9 | 13 (best 0.85) |
| 5E79 | Macromolecular diffractive imaging using imperfect crystals | x-ray diffraction | D, d | — | — |
| 5E7C | Macromolecular diffractive imaging using imperfect crystals - bragg data | x-ray diffraction | D, d | — | — |
| 5H2F | Crystal structure of the PsbM-deletion mutant of photosystem II | x-ray diffraction | D, d | FE2, CL, CLA, PHO, PL9, BCT | 14 (best 0.86) |
| 5H2F | Crystal structure of the psbm-deletion mutant of photosystem II | x-ray diffraction | D, d | — | — |
| 5KAF | RT XFEL structure of Photosystem II in the dark state at 3.0 A resolution | x-ray diffraction | D, d | FE2, SQD, CL, CLA, PHO, PL9 | 14 (best 0.84) |
| 5KAF | Rt xfel structure of photosystem II in the dark state at 3.0 a resolution | x-ray diffraction | D, d | FE2, SQD, CL, CLA, PHO, PL9 | — |
| 5KAI | NH3-bound RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 2.8 A… | x-ray diffraction | D, d | FE2, CL, CLA, PHO, PL9, SQD | 12 (best 0.84) |
| 5KAI | NH3-bound rt xfel structure of photosystem II 500 ms after the 2ND illumination (2F) at 2.8 a… | x-ray diffraction | D, d | FE2, CL, CLA, PHO, PL9, SQD | — |
| 5MX2 | Photosystem II depleted of the Mn4CaO5 cluster at 2.55 A resolution | x-ray diffraction | D, d | CLA, PHO, PL9, SQD, FE, LMG | — |
| 5MX2 | Photosystem II depleted of the MN4CAO5 cluster at 2.55 a resolution | x-ray diffraction | D, d | CLA, PHO, PL9, SQD, FE, BCT | — |
| 5TIS | Room temperature xfel structure of the native, doubly-illuminated photosystem II complex | x-ray diffraction | D, d | FE2, CL, BCT, CLA, PHO, PL9 | — |
| 5ZZN | Crystal structure of photosystem II from an SQDG-deficient mutant of Thermosynechococcus elongatus | x-ray diffraction | D, d | CL, CLA, PHO, PL9, UNL, LHG | 12 (best 0.82) |
| 5ZZN | Crystal structure of photosystem II from an sqdg-deficient mutant of thermosynechococcus elongatus | x-ray diffraction | D, d | CL, CLA, PHO, PL9, UNL, LHG | — |
| 6DHE | RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.05 Angstrom… | x-ray diffraction | D, d | FE2, CL, CLA, PHO, PL9, SQD | 12 (best 0.83) |
| 6DHF | RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.08 Angstrom resolution | x-ray diffraction | D, d | FE2, CL, BCT, CLA, PHO, PL9 | 12 (best 0.82) |
| 6DHG | RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.5 Angstrom… | x-ray diffraction | D, d | FE2, CL, CLA, PHO, PL9, SQD | 12 (best 0.83) |
| 6DHH | RT XFEL structure of Photosystem II 400 microseconds after the second illumination at 2.2 Angstrom… | x-ray diffraction | D, d | FE2, CL, CLA, PHO, PL9, SQD | 11 (best 0.83) |
| 6DHO | RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.07 Angstrom resolution | x-ray diffraction | D, d | FE2, CL, CLA, PHO, PL9, SQD | 12 (best 0.83) |
| 6DHP | RT XFEL structure of the three-flash state of Photosystem II (3F, S0-rich) at 2.04 Angstrom… | x-ray diffraction | D, d | FE2, CLA, PHO, CL, PL9, SQD | 11 (best 0.83) |
| 6W1O | RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.08 Angstrom… | x-ray diffraction | D, d | FE2, CLA, PHO, CL, PL9, SQD | 12 (best 0.83) |
| 6W1P | RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom resolution | x-ray diffraction | D, d | FE2, CLA, PHO, CL, BCT, PL9 | 13 (best 0.83) |
| 6W1Q | RT XFEL structure of Photosystem II 50 microseconds after the second illumination at 2.27 Angstrom… | x-ray diffraction | D, d | FE2, CLA, PHO, CL, PL9, SQD | 12 (best 0.83) |
| 6W1R | RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.23 Angstrom… | x-ray diffraction | D, d | FE2, CLA, CL, PL9, LHG, SQD | 12 (best 0.83) |
| 6W1T | RT XFEL structure of Photosystem II 250 microseconds after the second illumination at 2.01 Angstrom… | x-ray diffraction | D, d | FE2, CLA, PHO, CL, PL9, LHG | 12 (best 0.83) |
| 6W1U | RT XFEL structure of Photosystem II 400 microseconds after the second illumination at 2.09 Angstrom… | x-ray diffraction | D, d | FE2, CLA, PHO, CL, BCT, PL9 | 12 (best 0.82) |
| 6W1V | RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.09 Angstrom resolution | x-ray diffraction | D, d | FE2, CLA, CL, PL9, SQD, LHG | 12 (best 0.83) |
| 7NHO | Structure of PSII-M | electron microscopy | D | FE, CL, PHO, CLA, LHG, BCT | 9 (best 0.83) |
| 7NHO | Structure of psii-M | electron microscopy | D | FE, PHO, CLA, LHG, BCT, LMG | — |
| 7NHP | Structure of psii-I (psii with PSB27, PSB28, and PSB34) | electron microscopy | D | PHO, CLA, LHG, FE, LMG, PL9 | — |
| 7NHQ | Structure of PSII-I prime (PSII with Psb28, and Psb34) | electron microscopy | D | FE, CL, PHO, CLA, LHG, LMG | 11 (best 0.83) |
| 7NHQ | Structure of psii-I prime (psii with PSB28, and PSB34) | electron microscopy | D | FE, PHO, CLA, LHG, LMG, PL9 | — |
| 7RF1 | RT XFEL structure of Photosystem II averaged across all S-states at 1.89 Angstrom resolution | x-ray diffraction | D, d | FE2, CL, CLA, PHO, PL9, SQD | 13 (best 0.83) |
17 records more on the page itself.
Ligands
- CLA · Chlorophyll A · in 46 records
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 46 records
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 46 records
- PHO · Pheophytin A · in 46 records
- PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone · in 46 records
- BCR · Beta-carotene · in 45 records
- BCT · Bicarbonate ion · in 43 records
- CL · Chloride ion · in 41 records
- DGD · Digalactosyl diacyl glycerol (dgdg) · in 41 records
- FE2 · Fe (II) ion · in 39 records
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 39 records
- STE · Stearic acid · in 22 records
- UNL · Unknown ligand · in 16 records
- FE · Fe (III) ion · in 7 records
- LFA · Eicosane · in 2 records
- 8CT · (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene · in 1 record
Experiment against prediction
- 7YQ7 chain D against the predicted model Q8CM25: TM-score 1.00, RMSD 0.28 Å
- 5H2F chain d against the predicted model Q8CM25: TM-score 1.00, RMSD 0.28 Å
- 5H2F chain d against the predicted model Q8CM25: TM-score 1.00, RMSD 0.28 Å
- 4PBU chain d against the predicted model Q8CM25: TM-score 1.00, RMSD 0.28 Å
- 4PBU chain d against the predicted model Q8CM25: TM-score 1.00, RMSD 0.28 Å
- 4PBU chain D against the predicted model Q8CM25: TM-score 1.00, RMSD 0.28 Å
- 4PBU chain D against the predicted model Q8CM25: TM-score 1.00, RMSD 0.28 Å
- 4RVY chain D against the predicted model Q8CM25: TM-score 1.00, RMSD 0.28 Å
- 5MX2 chain D against the predicted model Q8CM25: TM-score 1.00, RMSD 0.28 Å
- 5MX2 chain D against the predicted model Q8CM25: TM-score 1.00, RMSD 0.28 Å
Elsewhere
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