MolNFT v1 · #173237 · protein
Cytochrome C oxidase structure in P-state
7ATE: “Cytochrome C oxidase structure in P-state”. Electron microscopy, 8 ligands (HEA, PEO, CUA). MolNFT v1 #173237 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7ATE
- Type
- protein
- Length
- 1,098 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P98002, P08306, P06030, P77921
- Ligands
- HEA, PEO, CUA, PC1, PGV, MN, CU, CA
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 537 | — | P98002 |
| B | — | protein | 251 | — | P08306 |
| C | — | protein | 269 | — | P06030 |
| D | — | protein | 41 | — | P77921 |
Ligands and binding sites
- HEA · Heme-A · ligand · 2 copies · chains A, B
- PEO · Hydrogen peroxide · ligand · chains A
- CUA · Dinuclear copper ion · ligand · chains B
- PC1 · 1,2-diacyl-sn-glycero-3-phosphocholine · ligand · chains A, C, D
- PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate · ligand · chains A, C
- MN · Manganese (II) ion · metal · chains A, B
- CU · Copper (II) ion · metal · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7ATE · Cytochrome c oxidase structure in P-state · the same entry in another collection · chain D against D, TM-score 1.00
- P98002 · AlphaFold monomer V2.0 prediction for cytochrome C oxidase subunit 1-beta (P98002) · a predicted model of the same protein · chain A against A, TM-score 1.00
- P08306 · AlphaFold monomer V2.0 prediction for cytochrome C oxidase subunit 2 (P08306) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P06030 · AlphaFold monomer V2.0 prediction for cytochrome C oxidase subunit 3 (P06030) · a predicted model of the same protein · chain C against A, TM-score 0.99
- P77921 · AlphaFold monomer V2.0 prediction for cytochrome C oxidase subunit 4 (P77921) · a predicted model of the same protein · chain D against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P98002
- Every structure of UniProt P08306
- Every structure of UniProt P06030
- Every structure of UniProt P77921
- Elsewhere: RCSB PDB 7ATE · PDBe 7ATE · UniProt P98002 · UniProt P08306 · UniProt P06030 · UniProt P77921
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