MolNFT v1 · #148347 · protein + DNA
RNA polymerase III open complex
6F40: “RNA polymerase III open complex”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #148347 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6F40
- Type
- protein + DNA
- Length
- 5,780 residues
- Chains
- 22
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P04051, P22276, P07703, P47076, P20434, P20435, P35718, P20436, Q04307, P22139, P28000, P40422, P36121, P25441, P32349, P32910, P17890, P13393, P29056, P46678
- Ligands
- ZN
Structure
electron microscopy · 22 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1398 | — | P04051 |
| B | — | protein | 1114 | — | P22276 |
| C | — | protein | 335 | — | P07703 |
| D | — | protein | 119 | — | P47076 |
| E | — | protein | 214 | — | P20434 |
| F | — | protein | 83 | — | P20435 |
| G | — | protein | 180 | — | P35718 |
| H | — | protein | 140 | — | P20436 |
| I | — | protein | 34 | — | Q04307 |
| J | — | protein | 67 | — | P22139 |
| K | — | protein | 101 | — | P28000 |
| L | — | protein | 45 | — | P40422 |
| M | — | protein | 183 | — | P36121 |
| N | — | protein | 104 | — | P25441 |
| O | — | protein | 534 | — | P32349 |
| P | — | protein | 246 | — | P32910 |
| Q | — | protein | 35 | — | P17890 |
| U | — | protein | 180 | — | P13393 |
| V | — | protein | 337 | — | P29056 |
| W | — | protein | 218 | — | P46678 |
| X | — | dna | 56 | — | — |
| Y | — | dna | 57 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 7 copies · chains A, B, I, J, L, V
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- P07703 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerases I and III subunit… · a predicted model of the same protein · chain C against A, TM-score 0.97
- P04051 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase III subunit RPC1… · a predicted model of the same protein · chain A against A, TM-score 0.97
- P22276 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase III subunit RPC2… · a predicted model of the same protein · chain B against A, TM-score 0.96
- P32349 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase III subunit RPC3… · a predicted model of the same protein · chain O against A, TM-score 0.96
- P28000 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerases I and III subunit… · a predicted model of the same protein · chain K against A, TM-score 0.95
- P13393 · AlphaFold monomer V2.0 prediction for tata-box-binding protein (P13393) · a predicted model of the same protein · chain U against A, TM-score 0.92
- P35718 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase III subunit RPC8… · a predicted model of the same protein · chain G against A, TM-score 0.90
- P29056 · AlphaFold monomer V2.0 prediction for transcription factor iiib 70 kda subunit (P29056) · a predicted model of the same protein · chain V against A, TM-score 0.88
- P36121 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase III subunit RPC5… · a predicted model of the same protein · chain M against A, TM-score 0.86
- P25441 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase III subunit RPC4… · a predicted model of the same protein · chain N against A, TM-score 0.85
- P47076 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase III subunit RPC9… · a predicted model of the same protein · chain D against A, TM-score 0.81
- P32910 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase III subunit RPC6… · a predicted model of the same protein · chain P against A, TM-score 0.72
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04051
- Every structure of UniProt P22276
- Every structure of UniProt P07703
- Every structure of UniProt P47076
- Every structure of UniProt P20434
- Every structure of UniProt P20435
- Every structure of UniProt P35718
- Every structure of UniProt P20436
- Every structure of UniProt Q04307
- Every structure of UniProt P22139
- Every structure of UniProt P28000
- Every structure of UniProt P40422
- Every structure of UniProt P36121
- Every structure of UniProt P25441
- Every structure of UniProt P32349
- Every structure of UniProt P32910
- Every structure of UniProt P17890
- Every structure of UniProt P13393
- Every structure of UniProt P29056
- Every structure of UniProt P46678
- Elsewhere: RCSB PDB 6F40 · PDBe 6F40 · UniProt P04051 · UniProt P22276 · UniProt P07703 · UniProt P47076 · UniProt P20434 · UniProt P20435 · UniProt P35718 · UniProt P20436 · UniProt Q04307 · UniProt P22139 · UniProt P28000 · UniProt P40422 · UniProt P36121 · UniProt P25441 · UniProt P32349 · UniProt P32910 · UniProt P17890 · UniProt P13393 · UniProt P29056 · UniProt P46678
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