MolNFT v1 · #145122 · protein
Cryo-EM structure of GATOR1-rag
6CES: “Cryo-EM structure of GATOR1-rag”. Electron microscopy, 1 ligand (GNP). MolNFT v1 #145122 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CES
- Type
- protein
- Length
- 2,348 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8WTW4, Q12980, O75140, Q7L523, Q9HB90
- Ligands
- GNP
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| N | — | protein | 321 | — | Q8WTW4 |
| M | — | protein | 519 | — | Q12980 |
| D | — | protein | 901 | — | O75140 |
| A | — | protein | 300 | — | Q7L523 |
| C | — | protein | 307 | — | Q9HB90 |
Ligands and binding sites
- GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CES · Cryo-EM structure of GATOR1-RAG · the same entry in another collection · chain C against C, TM-score 1.00
- Q7L523 · AlphaFold monomer V2.0 prediction for RAS-related GTP-binding protein a (Q7L523) · a predicted model of the same protein · chain A against A, TM-score 0.95
- O75140 · AlphaFold monomer V2.0 prediction for gator complex protein DEPDC5 (O75140) · a predicted model of the same protein · chain D against A, TM-score 0.82
- Q9HB90 · AlphaFold monomer V2.0 prediction for RAS-related GTP-binding protein C (Q9HB90) · a predicted model of the same protein · chain C against A, TM-score 0.79
- Q8WTW4 · AlphaFold monomer V2.0 prediction for gator complex protein NPRL2 (Q8WTW4) · a predicted model of the same protein · chain N against A, TM-score 0.72
- Q12980 · AlphaFold monomer V2.0 prediction for gator complex protein NPRL3 (Q12980) · a predicted model of the same protein · chain M against A, TM-score 0.45
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8WTW4
- Every structure of UniProt Q12980
- Every structure of UniProt O75140
- Every structure of UniProt Q7L523
- Every structure of UniProt Q9HB90
- Elsewhere: RCSB PDB 6CES · PDBe 6CES · UniProt Q8WTW4 · UniProt Q12980 · UniProt O75140 · UniProt Q7L523 · UniProt Q9HB90
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