MolNFT v1 · #142973 · protein + DNA + RNA
Cryoem structure of crosslinked E.COLI RNA polymerase elongation complex
6ALF: “Cryoem structure of crosslinked E.COLI RNA polymerase elongation complex”. Electron microscopy, 2 ligands (ZN, MG). MolNFT v1 #142973 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ALF
- Type
- protein + DNA + RNA
- Length
- 3,237 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A7Z4, P0A8V2, P0A8T7, P0A800
- Ligands
- ZN, MG
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | dna | 22 | — | — |
| B | — | dna | 29 | — | — |
| R | — | rna | 12 | — | — |
| G | — | protein | 222 | — | P0A7Z4 |
| H | — | protein | 220 | — | P0A7Z4 |
| I | — | protein | 1316 | — | P0A8V2 |
| J | — | protein | 1337 | — | P0A8T7 |
| K | — | protein | 79 | — | P0A800 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ALF · CryoEM structure of crosslinked E.coli RNA polymerase elongation complex · the same entry in another collection · chain K against K, TM-score 1.00
- P0A8V2 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta (P0A8V2) · a predicted model of the same protein · chain I against A, TM-score 0.99
- P0A8T7 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta' (P0A8T7) · a predicted model of the same protein · chain J against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A7Z4
- Every structure of UniProt P0A8V2
- Every structure of UniProt P0A8T7
- Every structure of UniProt P0A800
- Elsewhere: RCSB PDB 6ALF · PDBe 6ALF · UniProt P0A7Z4 · UniProt P0A8V2 · UniProt P0A8T7 · UniProt P0A800
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