MolNFT v1 · #139645 · protein
The crystal structure of tubulin complexed with a benzylidene derivative of 9(10H)-anthracenone
5XLZ: “The crystal structure of tubulin complexed with a benzylidene derivative of 9(10H)-anthracenone”. X-ray diffraction, 6 ligands (GTP, 89U, GDP). MolNFT v1 #139645 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XLZ
- Type
- protein
- Length
- 2,180 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P81947, Q6B856, P63043, E1BQ43
- Ligands
- GTP, 89U, GDP, ACP, MG, CA
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 437 | — | P81947 |
| B | — | protein | 427 | — | Q6B856 |
| C | — | protein | 440 | — | P81947 |
| D | — | protein | 421 | — | Q6B856 |
| E | — | protein | 121 | — | P63043 |
| F | — | protein | 334 | — | E1BQ43 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · 3 copies · chains A, B, C, D
- 89U · 10-[(4-methoxy-3-oxidanyl-phenyl)methylidene]anthracen-9-one · ligand · 2 copies · chains A, B, C, D
- GDP · Guanosine-5'-diphosphate · ligand · chains B
- ACP · Phosphomethylphosphonic acid adenylate ester · ligand · chains F
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
- CA · Calcium ion · metal · 2 copies · chains A, C
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XLZ · The crystal structure of tubulin complexed with a benzylidene derivative of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P81947
- Every structure of UniProt Q6B856
- Every structure of UniProt P63043
- Every structure of UniProt E1BQ43
- Elsewhere: RCSB PDB 5XLZ · PDBe 5XLZ · UniProt P81947 · UniProt Q6B856 · UniProt P63043 · UniProt E1BQ43
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.