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Triazolopyrimidines stabilize microtubules by binding to the vinca inhibitor site of tubulin

Analyse Triazolopyrimidines stabilize microtubules by binding to the vinca inhibitor… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5NJH
Type
protein
Length
2,171 residues
Chains
6
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P81947, Q6B856, P63043, E1BQ43
Ligands
GTP, GDP, 8Z8, ACP, MG

Structure

x-ray diffraction · 6 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein435—P81947
B—protein413—Q6B856
C—protein439—P81947
D—protein424—Q6B856
E—protein121—P63043
F—protein339—E1BQ43

Ligands and binding sites

  • GTP · Guanosine-5'-triphosphate · ligand · 2 copies · chains A, B, C, D
  • GDP · Guanosine-5'-diphosphate · ligand · 2 copies · chains B, D
  • 8Z8 · 5-chloranyl-7-[(1~{R},5~{S})-3-methoxy-8-azabicyclo[3.2.1]octan-8-yl]-6-[2,4,6-tris(fluoranyl) phenyl]-[1,2,4]triazolo[1,5-a]pyrimidine · ligand · chains B, C
  • ACP · Phosphomethylphosphonic acid adenylate ester · ligand · chains F
  • MG · Magnesium ion · metal · 5 copies · chains B, D, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5NJH · Triazolopyrimidines stabilize microtubules by binding to the vinca inhibitor site of… · the same entry in another collection · chain A against A, TM-score 1.00

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