UniProt Q9NPB1
5'(3')-deoxyribonucleotidase, mitochondrial (Q9NPB1)
5'(3')-deoxyribonucleotidase, mitochondrial (UniProt Q9NPB1), EC 3.1.3.-: 41 experimental structures on GenesisL1, 5 ligands bound, 3 pockets. Binding sites, pockets, druggability and 3D structures in GL1X.
- UniProt
- Q9NPB1
- Protein
- 5'(3')-deoxyribonucleotidase, mitochondrial
- EC
- 3.1.3.-
- Experimental structures
- 41
- Predicted models
- 0
- Ligands
- 5
- Pockets
- 3 · 2 records with a druggable one
Structures
41 records of Q9NPB1 in the MolNFT archive: 41 experimental, 0 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1MH9 | Crystal Structure Analysis of deoxyribonucleotidase | x-ray diffraction | A | — | — |
| 1MH9 | Crystal structure analysis of deoxyribonucleotidase | x-ray diffraction | A | — | — |
| 1Q91 | Crystal structure of human mitochondrial deoxyribonucleotidase in complex with the inhibitor DPB-T | x-ray diffraction | A | — | — |
| 1Q91 | Crystal structure of human mitochondrial deoxyribonucleotidase in complex with the inhibitor dpb-T | x-ray diffraction | A | — | — |
| 1Q92 | Crystal structure of human mitochondrial deoxyribonucleotidase in complex with the inhibitor PMcP-U | x-ray diffraction | A | — | — |
| 1Q92 | Crystal structure of human mitochondrial deoxyribonucleotidase in complex with the inhibitor pmcp-U | x-ray diffraction | A | — | — |
| 1Z4I | Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with… | x-ray diffraction | A | — | — |
| 1Z4I | Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with… | x-ray diffraction | A | — | — |
| 1Z4J | Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with… | x-ray diffraction | A | — | — |
| 1Z4J | Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with… | x-ray diffraction | A | — | — |
| 1Z4K | Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with… | x-ray diffraction | A | — | — |
| 1Z4K | Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with… | x-ray diffraction | A | — | — |
| 1Z4L | Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with… | x-ray diffraction | A | — | — |
| 1Z4L | Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with… | x-ray diffraction | A | — | — |
| 1Z4M | Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with… | x-ray diffraction | A | — | — |
| 1Z4M | Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with… | x-ray diffraction | A | — | — |
| 1Z4P | Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with… | x-ray diffraction | X | — | — |
| 1Z4P | Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with… | x-ray diffraction | X | — | — |
| 1Z4Q | Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with… | x-ray diffraction | A | — | — |
| 1Z4Q | Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with… | x-ray diffraction | A | — | — |
| 2JAU | Crystal structure of D41N variant of human mitochondrial 5'(3')- deoxyribonucleotidase (mdN) in… | x-ray diffraction | A | — | — |
| 2JAU | Crystal structure of D41N variant of human mitochondrial 5'(3')- deoxyribonucleotidase (mdn) in… | x-ray diffraction | A | — | — |
| 2JAW | Crystal structure of D41N variant of human mitochondrial 5'(3')- deoxyribonucleotidase (mdN) in… | x-ray diffraction | A | — | — |
| 2JAW | Crystal structure of D41N variant of human mitochondrial 5'(3')- deoxyribonucleotidase (mdn) in… | x-ray diffraction | A | — | — |
| 4L6A | Structure of human mitochondrial 5'(3')-deoxyribonucleotidase | x-ray diffraction | A | — | — |
| 4L6A | Structure of human mitochondrial 5'(3')-deoxyribonucleotidase | x-ray diffraction | A | — | — |
| 4L6C | Crystal structure of human mitochondrial deoxyribonucleotidase in complex with the inhibitor pib-t | x-ray diffraction | A | — | — |
| 4L6C | Crystal structure of human mitochondrial deoxyribonucleotidase in complex with the inhibitor pib-T | x-ray diffraction | A | — | — |
| 4MWO | Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the inhibitor… | x-ray diffraction | A | — | — |
| 4MWO | Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the inhibitor… | x-ray diffraction | A | — | — |
| 4NFL | Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the inhibitor… | x-ray diffraction | A | — | — |
| 4NFL | Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the inhibitor… | x-ray diffraction | A | — | — |
| 4YIK | Crystal structure of human cytosolic 5'(3')-deoxyribonucleotidase in complex with the inhibitor… | x-ray diffraction | A | — | — |
| 4YIK | Crystal structure of human cytosolic 5'(3')-deoxyribonucleotidase in complex with the inhibitor… | x-ray diffraction | A | — | — |
| 6G22 | Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the inhibitor… | x-ray diffraction | A | MG, 2O2 | 2 (best 0.71) |
| 6G22 | Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the inhibitor… | x-ray diffraction | A | MG, 2O2 | — |
| 6G2L | Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the inhibitor… | x-ray diffraction | A | MG, EJ8 | 1 (best 0.70) |
| 6G2L | Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the inhibitor… | x-ray diffraction | A | MG, EJ8 | — |
| 6G2M | Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the inhibitor… | x-ray diffraction | A | O84, MG, K | — |
| 6G2M | Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the inhibitor… | x-ray diffraction | A | O84, MG, K | — |
| Q9NPB1 | AlphaFold monomer V2.0 prediction for 5'(3')-deoxyribonucleotidase, mitochondrial (Q9NPB1) | — | — | — |
Ligands
- MG · Magnesium ion · in 6 records
- 2O2 · 1-{2-deoxy-3,5-O-[phenyl(phosphono)methylidene]-beta-D-threo-pentofuranosyl}-5-[(E)-2-phosphonoethenyl]pyrimidine-2,4(1H,3H)-dione · in 2 records
- EJ8 · [(2~{R},4~{A}~{R},6~{R},7~{A}~{R})-6-[2,4-bis(oxidanylidene)-5-(phosphonomethylsulfanylmethyl) pyrimidin-1-yl]-2-phenyl-4~{A},6,7,7~{A}-tetrahydro-4~{H}-furo[3,2-d][1,3]dioxin-2-yl]phosphonic acid · in 2 records
- K · Potassium ion · in 2 records
- O84 · [(2~{R},4~{a}~{R},6~{R},7~{a}~{R})-6-[2,4-bis(oxidanylidene)-5-[(~{E})-3-phosphonoprop-1-enyl]pyrimidin-1-yl]-2-phenyl-4~{a},6,7,7~{a}-tetrahydro-4~{H}-furo[3,2-d][1,3]dioxin-2-yl]phosphonic acid · in 2 records
Elsewhere
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