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Ligand · 2E2

2E2 · 1-{3,5-O-[(4-carboxyphenyl)(phosphono)methylidene]-2-deoxy-beta-D-threo-pentofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione

2E2, 1-{3,5-O-[(4-carboxyphenyl)(phosphono)methylidene]-2-deoxy-beta-D-threo-pentofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione (C18 H19 N2 O10 P, 454.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry).…

Component
2E2
Formula
C18 H19 N2 O10 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

2E2 in 2 structures; the first of them:

  • 4MWO · Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the… · 2E2 A301 · binds ASP43, PHE49, PHE75, TRP76, VAL77, SER78, TRP96, SER131 and 5 more
  • 4MWO · Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the… · 2E2 A301 · binds ASP43, PHE49, PHE75, TRP76, VAL77, SER78, TRP96, SER131 and 5 more

Residues it binds most

ARG 2, PHE 2, SER 2, TRP 2, ASP 2, ILE 2, LYS 2, PRO 2, VAL 2 (residue and the binding sites it lines).

Found with

  • K · Potassium ion
  • PO4 · Phosphate ion
  • GOL · Glycerol

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