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Ligand · T3P

T3P · Thymidine-3'-phosphate

T3P, Thymidine-3'-phosphate (C10 H15 N2 O8 P, 322.2 g/mol), in the MolNFT structures on GenesisL1: bound in 10 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
T3P
Formula
C10 H15 N2 O8 P
Class
ligand
Structures
10
PDB entries
5

Binding sites

T3P in 10 structures; the first of them:

  • 1CY6 · Complex of E.COLI DNA topoisomerase I with 3' thymidine monophosphate · T3P A600 · binds LEU112, ASP113, ARG114, GLU115, ARG161, GLN165, ARG168, ARG321 and 6 more
  • 1CY8 · Complex of E.COLI DNA topoisomerase I with 5'-thymidine monophosphate and 3'-thymidine… · T3P A600 · binds LEU112, ASP113, ARG114, GLU115, ARG161, GLN165, ARG168, ARG321 and 7 more
  • 1Z4K · Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex… · T3P A4341 · binds ASN41, MET42, ASP43, PHE49, PHE75, TRP76, VAL77, TRP96 and 9 more
  • 3LXO · The crystal structure of ribonuclease A in complex with thymidine-3'-monophosphate · T3P A601 · binds GLN11, HIS12, LYS41, VAL43, ASN44, THR45, ASP83, HIS119 and 2 more
  • 3ROG · Crystal Structure of Mouse Apolipoprotein A-I Binding Protein in Complex with Thymidine… · T3P A265 · binds ALA35, VAL38, ASP39, LEU42, PHE43, LEU53, MSE54, ASN89 and 8 more
  • 1CY6 · Complex of E.COLI DNA topoisomerase I with 3' thymidine monophosphate · T3P A600 · binds LEU112, ASP113, ARG114, GLU115, ARG161, GLN165, ARG168, ARG321 and 6 more
  • 1CY8 · Complex of E.COLI DNA topoisomerase I with 5'-thymidine monophosphate and 3'-thymidine… · T3P A600 · binds LEU112, ASP113, ARG114, GLU115, ARG161, GLN165, ARG168, ARG321 and 7 more
  • 1Z4K · Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex… · T3P A4341 · binds ASN41, MET42, ASP43, PHE49, PHE75, TRP76, VAL77, TRP96 and 9 more
  • 3LXO · The crystal structure of ribonuclease a in complex with thymidine-3'- monophosphate · T3P A601 · binds GLN11, HIS12, LYS41, VAL43, ASN44, THR45, ASP83, HIS119 and 2 more
  • 3ROG · Crystal structure of mouse apolipoprotein a-I binding protein in complex with thymidine… · T3P A265 · binds ALA35, VAL38, ASP39, LEU42, PHE43, LEU53, MSE54, ASN89 and 8 more

Residues it binds most

ARG 6, ASP 10, PHE 6, LEU 6, THR 10, ALA 6, ASN 8, HIS 6, LYS 6, GLN 6 (residue and the binding sites it lines).

Found with

  • PO4 · Phosphate ion
  • TMP · Thymidine-5'-phosphate
  • MG · Magnesium ion
  • SO4 · Sulfate ion

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