Ligand · D4M
D4M · [(5R)-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-2,5-dihydrofuran-2-yl]methyl dihydrogen phosphate
D4M, [(5R)-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-2,5-dihydrofuran-2-yl]methyl dihydrogen phosphate (C10 H13 N2 O7 P, 304.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site…
- Component
- D4M
- Formula
- C10 H13 N2 O7 P
- Class
- ligand
- Structures
- 4
- PDB entries
- 3
Binding sites
D4M in 4 structures; the first of them:
- 1Z4Q · Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex… · D4M A1489 · binds ASN41, ASP43, PHE49, PHE75, TRP76, VAL77, SER78, TRP96 and 7 more
- 6UU3 · E. coli sigma-S transcription initiation complex with a 4-nt RNA and a CTP ("Old" crystal… · D4M 333101 · binds GLU565, LYS1065, LYS1073, ARG425, ASP462, ASP464, DA13, G16
- 6WPF · Structure of HIV-1 Reverse Transcriptase (RT) in complex with dsDNA and d4T · D4M P901 · binds DG822, LYS66, ASP110, ASP186, LYS220, GLN222, LEU228
- 1Z4Q · Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex… · D4M A1489 · binds ASN41, ASP43, PHE49, PHE75, TRP76, VAL77, SER78, TRP96 and 7 more
Residues it binds most
ASP 4, LYS 4, PHE 2, SER 2, TRP 2, ASN 2, ILE 2, THR 2, VAL 2, ARG 1 (residue and the binding sites it lines).
Found with
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