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Ligand · 2JW

2JW · 1-{2-deoxy-3,5-O-[(4-nitrophenyl)(phosphono)methylidene]-beta-D-threo-pentofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione

2JW, 1-{2-deoxy-3,5-O-[(4-nitrophenyl)(phosphono)methylidene]-beta-D-threo-pentofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione (C17 H18 N3 O10 P, 455.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every…

Component
2JW
Formula
C17 H18 N3 O10 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

2JW in 2 structures; the first of them:

  • 4NFL · Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the… · 2JW A303 · binds ASP43, PHE49, PHE75, TRP76, VAL77, SER78, TRP96, SER131 and 6 more
  • 4NFL · Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the… · 2JW A303 · binds ASP43, PHE49, PHE75, TRP76, VAL77, SER78, TRP96, SER131 and 6 more

Residues it binds most

ARG 2, ASP 2, PHE 2, SER 2, TRP 2, ILE 2, LYS 2, PRO 2, VAL 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • PO4 · Phosphate ion
  • GOL · Glycerol
  • PEG · Di(hydroxyethyl)ether
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol

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