UniProt P02699
Rhodopsin (P02699)
Rhodopsin (UniProt P02699): 114 experimental structures and 1 predicted model on GenesisL1, 20 ligands bound, 71 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P02699
- Protein
- Rhodopsin
- Experimental structures
- 114
- Predicted models
- 1
- Ligands
- 20
- Pockets
- 71 · 10 records with a druggable one
Structures
115 records of P02699 in the MolNFT archive: 114 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1EDS | Solution structure of intradiskal loop 1 of bovine rhodopsin (rhodopsin residues 92-123) | solution nmr | A | — | — |
| 1EDS | Solution structure of intradiskal loop 1 of bovine rhodopsin (rhodopsin residues 92-123) | solution nmr | A | — | — |
| 1EDV | Solution structure of 2ND intradiskal loop of bovine rhodopsin (residues 172-205) | solution nmr | A | — | — |
| 1EDV | Solution structure of 2ND intradiskal loop of bovine rhodopsin (residues 172-205) | solution nmr | A | — | — |
| 1EDW | Solution structure of third intradiskal loop of bovine rhodopsin (residues 268-293) | solution nmr | A | — | — |
| 1EDW | Solution structure of third intradiskal loop of bovine rhodopsin (residues 268-293) | solution nmr | A | — | — |
| 1EDX | Solution structure of amino terminus of bovine rhodopsin (residues 1-40) | solution nmr | A | — | — |
| 1EDX | Solution structure of amino terminus of bovine rhodopsin (residues 1- 40) | solution nmr | A | — | — |
| 1F88 | Crystal structure of bovine rhodopsin | x-ray diffraction | A, B | — | — |
| 1F88 | Crystal structure of bovine rhodopsin | x-ray diffraction | A, B | — | — |
| 1FDF | Helix 7 bovine rhodopsin | solution nmr | A | — | — |
| 1FDF | Helix 7 bovine rhodopsin | solution nmr | A | — | — |
| 1GZM | Structure of Bovine Rhodopsin in a Trigonal Crystal Form | x-ray diffraction | A, B | — | — |
| 1GZM | Structure of bovine rhodopsin in a trigonal crystal form | x-ray diffraction | A, B | — | — |
| 1HZX | Crystal structure of bovine rhodopsin | x-ray diffraction | A, B | — | — |
| 1HZX | Crystal structure of bovine rhodopsin | x-ray diffraction | A, B | — | — |
| 1JFP | Structure of bovine rhodopsin (dark adapted) | solution nmr | A | — | — |
| 1JFP | Structure of bovine rhodopsin (dark adapted) | solution nmr | A | — | — |
| 1L9H | Crystal structure of bovine rhodopsin at 2.6 angstroms RESOLUTION | x-ray diffraction | A, B | — | — |
| 1L9H | Crystal structure of bovine rhodopsin at 2.6 ångströms resolution | x-ray diffraction | A, B | — | — |
| 1LN6 | STRUCTURE OF BOVINE RHODOPSIN (Metarhodopsin II) | solution nmr | A | — | — |
| 1LN6 | Structure of bovine rhodopsin (metarhodopsin II) | solution nmr | A | — | — |
| 1NZS | NMR structures of phosphorylated carboxy terminus of bovine rhodopsin in arrestin-bound state | solution nmr | A | — | — |
| 1NZS | NMR structures of phosphorylated carboxy terminus of bovine rhodopsin in arrestin-bound state | solution nmr | A | — | — |
| 1U19 | Crystal Structure of Bovine Rhodopsin at 2.2 Angstroms Resolution | x-ray diffraction | A, B | — | — |
| 1U19 | Crystal structure of bovine rhodopsin at 2.2 ångströms resolution | x-ray diffraction | A, B | — | — |
| 1VQX | Arrestin-bound NMR structures of the phosphorylated carboxy-terminal domain of rhodopsin, refined | solution nmr | A | — | — |
| 1VQX | Arrestin-bound NMR structures of the phosphorylated carboxy-terminal domain of rhodopsin, refined | solution nmr | A | — | — |
| 2G87 | Crystallographic model of bathorhodopsin | x-ray diffraction | A, B | — | — |
| 2G87 | Crystallographic model of bathorhodopsin | x-ray diffraction | A, B | — | — |
| 2HPY | Crystallographic model of lumirhodopsin | x-ray diffraction | A, B | — | — |
| 2HPY | Crystallographic model of lumirhodopsin | x-ray diffraction | A, B | — | — |
| 2I35 | Crystal structure of rhombohedral crystal form of ground-state rhodopsin | x-ray diffraction | A | — | — |
| 2I35 | Crystal structure of rhombohedral crystal form of ground-state rhodopsin | x-ray diffraction | A | — | — |
| 2I36 | Crystal structure of trigonal crystal form of ground-state rhodopsin | x-ray diffraction | A, B, C | — | — |
| 2I36 | Crystal structure of trigonal crystal form of ground-state rhodopsin | x-ray diffraction | A, B, C | — | — |
| 2I37 | Crystal structure of a photoactivated rhodopsin | x-ray diffraction | A, B, C | — | — |
| 2I37 | Crystal structure of a photoactivated rhodopsin | x-ray diffraction | A, B, C | — | — |
| 2J4Y | Crystal structure of a rhodopsin stabilizing mutant expressed in mammalian cells | x-ray diffraction | A, B | — | — |
| 2J4Y | Crystal structure of a rhodopsin stabilizing mutant expressed in mammalian cells | x-ray diffraction | A, B | — | — |
| 2PED | Crystallographic model of 9-cis-rhodopsin | x-ray diffraction | A, B | — | — |
| 2PED | Crystallographic model of 9-cis-rhodopsin | x-ray diffraction | A, B | — | — |
| 2X72 | Crystal structure of the constitutively active E113Q,D2C,D282C rhodopsin mutant with bound galphact… | x-ray diffraction | A | — | — |
| 2X72 | Crystal structure of the constitutively active E113Q,D2C,D282C rhodopsin mutant with bound galphact… | x-ray diffraction | A | — | — |
| 3C9L | Structure of ground-state bovine rhodospin in a hexagonal crystal form | x-ray diffraction | A | — | — |
| 3C9L | Structure of ground-state bovine rhodospin in a hexagonal crystal form | x-ray diffraction | A | — | — |
| 3C9M | Structure of a mutant bovine rhodopsin in hexagonal crystal form | x-ray diffraction | A | — | — |
| 3C9M | Structure of a mutant bovine rhodopsin in hexagonal crystal form | x-ray diffraction | A | — | — |
| 3CAP | Crystal Structure of Native Opsin: the G Protein-Coupled Receptor Rhodopsin in its Ligand-free State | x-ray diffraction | A, B | — | — |
| 3CAP | Crystal structure of native opsin: the G protein-coupled receptor rhodopsin in its ligand-free state | x-ray diffraction | A, B | — | — |
| 3DQB | Crystal structure of the active G-protein-coupled receptor opsin in complex with a C-terminal… | x-ray diffraction | A | — | — |
| 3DQB | Crystal structure of the active G-protein-coupled receptor opsin in complex with a C-terminal… | x-ray diffraction | A | — | — |
| 3OAX | Crystal structure of bovine rhodopsin with beta-io | x-ray diffraction | A, B | — | — |
| 3OAX | Crystal structure of bovine rhodopsin with beta-ionone | x-ray diffraction | A, B | — | — |
| 3PQR | Crystal structure of Metarhodopsin II in complex with a C-terminal peptide derived from the Galpha… | x-ray diffraction | A | — | — |
| 3PQR | Crystal structure of metarhodopsin II in complex with a C-terminal peptide derived from the galpha… | x-ray diffraction | A | — | — |
| 3PXO | Crystal structure of Metarhodopsin II | x-ray diffraction | A | — | — |
| 3PXO | Crystal structure of metarhodopsin II | x-ray diffraction | A | — | — |
| 4A4M | Crystal structure of the light-activated constitutively active N2C, M257Y,D282C rhodopsin mutant in… | x-ray diffraction | A | — | — |
| 4A4M | Crystal structure of the light-activated constitutively active N2C, M257Y,D282C rhodopsin mutant in… | x-ray diffraction | A | — | — |
55 records more on the page itself.
Ligands
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · in 30 records
- PLM · Palmitic acid · in 24 records
- RET · Retinal · in 15 records
- ACE · Acetyl group · in 11 records
- SO4 · Sulfate ion · in 6 records
- DAO · Lauric acid · in 2 records
- DL2 · 5-chloranyl-2-(2-oxidanylidene-2-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-ethyl)-3~{H}-pyridin-6-one · in 2 records
- DLH · 2-(4-chlorophenyl)-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-ethanone · in 2 records
- DO5 · (2~{R},3~{R})-2-(4-chlorophenyl)-3-oxidanyl-1-spiro[1, 3-benzodioxole-2,4'-piperidine]-1'-yl-butan-1-one · in 2 records
- ODM · (3R)-3,7-dimethyloct-6-en-1-ol · in 2 records
- 64Z · Geraniol · in 1 record
- 7AB · (2E)-{(4E)-4-[(3E)-4-(2,6,6-trimethylcyclohex-1-en-1-yl)but-3-en-2-ylidene]cyclohex-2-en-1-ylidene}acetaldehyde · in 1 record
- BNG · nonyl beta-D-glucopyranoside · in 1 record
- DLB · 3-[1'-[(2~{S})-2-(4-chlorophenyl)-3-methyl-butanoyl]spiro[1,3-benzodioxole-2,4'-piperidine]-5-yl]propanoic acid · in 1 record
- DN5 · (2~{S})-2-(3,4-dichlorophenyl)-3-methyl-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-butan-1-one · in 1 record
- DNK · (2~{S})-3-methyl-2-phenyl-1-spiro[1,3-benzodioxole-2, 4'-piperidine]-1'-yl-butan-1-one · in 1 record
- DNZ · (2~{R},3~{S})-3-azanyl-2-(4-chlorophenyl)-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-butan-1-one · in 1 record
- DOK · (2~{S})-2-(4-chlorophenyl)-3-methyl-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-butan-1-one · in 1 record
- GLC · alpha-D-glucopyranose · in 1 record
- NZZ · (2Z)-3,7-dimethylocta-2,6-dien-1-ol · in 1 record
Experiment against prediction
- 5EN0 chain A against the predicted model P02699: TM-score 0.99, RMSD 0.79 Å
- 5EN0 chain A against the predicted model P02699: TM-score 0.99, RMSD 0.79 Å
- 4PXF chain A against the predicted model P02699: TM-score 0.99, RMSD 0.80 Å
- 4PXF chain A against the predicted model P02699: TM-score 0.99, RMSD 0.80 Å
- 4X1H chain A against the predicted model P02699: TM-score 0.99, RMSD 0.81 Å
- 4X1H chain A against the predicted model P02699: TM-score 0.99, RMSD 0.81 Å
- 6NWE chain A against the predicted model P02699: TM-score 0.99, RMSD 0.84 Å
- 4BEY chain A against the predicted model P02699: TM-score 0.99, RMSD 0.83 Å
- 4BEY chain A against the predicted model P02699: TM-score 0.99, RMSD 0.83 Å
- 4A4M chain A against the predicted model P02699: TM-score 0.99, RMSD 0.83 Å
Elsewhere
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