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Ligand · PEF

PEF · Di-palmitoyl-3-sn-phosphatidylethanolamine

PEF, Di-palmitoyl-3-sn-phosphatidylethanolamine (C37 H74 N O8 P, 692.0 g/mol), in the MolNFT structures on GenesisL1: bound in 36 records (28 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
PEF
Formula
C37 H74 N O8 P
Class
ligand
Structures
36
PDB entries
28

Binding sites

PEF in 36 structures; the first of them:

  • 5B5M · Crystal structure of the Sr-substituted LH1-RC complex from Tch. tepidum · PEF L306 · binds LEU17, VAL114, ARG118, PHE124
  • 5B5N · Crystal structure of the Ba-substituted LH1-RC complex from Tch. tepidum · PEF L305 · binds LEU17, VAL114, ARG118, PHE124
  • 5KLV · Structure of bos taurus cytochrome bc1 with fenamidone inhibited · PEF D1002 · binds LEU43, LEU46, TYR75, MET82, ILE236, MET240, LEU244, HIS200 and 6 more
  • 5Z1N · Crystal structure of C terminal region of G-protein interacting protein 1 (Gip1) from… · PEF A401 · binds ILE152, PRO153, GLU155, GLY156, LEU159, ILE160, VAL163, ILE166 and 21 more
  • 5Z39 · Crystal structure of C terminal region of G-protein interacting protein 1 (Gip1) from… · PEF A401 · binds PRO153, GLU155, GLY156, LEU159, VAL163, ILE183, ILE186, LEU187 and 18 more
  • 6AWL · Crystal structure of human Coq9 · PEF A401 · binds LEU217, TRP240, TYR241, ARG244, ALA248, ALA249, ASN252, ILE213 and 5 more
  • 6HU9 · III2-IV2 mitochondrial respiratory supercomplex from S. cerevisiae · PEF A501 · binds SER450, SER453, MET455, SER34, GLY37, MET221, HIS222, ILE226 and 6 more

Residues it binds most

PHE 226, LEU 216, ILE 213, VAL 181, SER 151, THR 119, TYR 138, MET 109, ALA 123, TRP 128 (residue and the binding sites it lines).

Found with

  • CDL · Cardiolipin
  • HEM · Protoporphyrin IX containing Fe
  • CA · Calcium ion
  • HEC · Heme C
  • MG · Magnesium ion
  • FES · Fe2/s2 (inorganic) cluster
  • HEA · Heme-A
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • CU · Copper (II) ion
  • CUA · Dinuclear copper ion
  • ZN · Zinc ion
  • PCF · 1,2-diacyl-sn-glycero-3-phoshocholine

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