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Ligand · 64Z

64Z · Geraniol

64Z, Geraniol (C10 H18 O, 154.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
64Z
Formula
C10 H18 O
Class
ligand
Structures
4
PDB entries
3

Binding sites

64Z in 4 structures; the first of them:

  • 6DEW · Structure of human COQ9 protein with bound isoprene. · 64Z A302 · binds LEU217, SER218, THR221, LEU217, LEU220, THR221, ARG244, ALA245 and 1 more
  • 8PWO · Hepatitis B core protein with bound Geraniol · 64Z A201 · binds PRO5, TYR6, VAL13, ALA58, CYS61, LYS96, PHE97, GLN99 and 5 more
  • 6DEW · Structure of human COQ9 protein with bound isoprene. · 64Z A302 · binds SER218, LEU220, ARG244, ALA245, ALA248
  • 6PGS · Crystal structure of bovine opsin with geraniol bound · 64Z A403 · binds GLU122, TYR191, MET207, PHE208, HIS211, PHE212, TRP265, TYR268 and 2 more

Residues it binds most

LEU 9, GLU 9, TYR 8, ALA 5, GLN 4, MET 5, ASN 4, CYS 4, PHE 5, SER 6 (residue and the binding sites it lines).

Found with

  • FOF · (2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol
  • FOH · (2Z,6Z)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol
  • N1S · (2Z,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol
  • SO4 · Sulfate ion
  • PLM · Palmitic acid
  • BMA · beta-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • BOG · octyl beta-D-glucopyranoside

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