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Ligand · AMG

AMG · methyl alpha-D-galactopyranoside

AMG, methyl alpha-D-galactopyranoside (C7 H14 O6, 194.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
AMG
Formula
C7 H14 O6
Class
sugar
Structures
3
PDB entries
2

Binding sites

AMG in 3 structures; the first of them:

  • 5JM1 · Structure of tetrameric jacalin complexed with a trisaccharide, Gal alpha-(1,3) Gal… · AMG G205 · binds GLY1, TYR78, VAL80, GLY121, TYR122, TRP123, ASP125
  • 5ODU · PllA lectin, monosaccharide complex · AMG A201 · binds TYR38, GLY39, GLU44, GLN57, PRO58, ILE61, ASP96, VAL97 and 2 more
  • 5ODU · Plla lectin, monosaccharide complex · AMG A201 · binds TYR38, GLU44, GLN57, ILE61, ASP96, VAL97, THR100, ASP103

Residues it binds most

ASP 17, TYR 17, VAL 17, GLN 16, GLU 16, ILE 16, THR 16, GLY 10, PRO 11, TRP 1 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • GAL · beta-D-galactopyranose
  • GLA · alpha-D-galactopyranose
  • EDO · 1,2-ethanediol
  • PEG · Di(hydroxyethyl)ether

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