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Ligand · MGC

MGC · methyl 2-acetamido-2-deoxy-alpha-D-galactopyranoside

MGC, methyl 2-acetamido-2-deoxy-alpha-D-galactopyranoside (C9 H17 N O6, 235.2 g/mol), in the MolNFT structures on GenesisL1: bound in 12 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most…

Component
MGC
Formula
C9 H17 N O6
Class
sugar
Structures
12
PDB entries
6

Binding sites

MGC in 12 structures; the first of them:

  • 1UGX · Crystal structure of jacalin- Me-alpha-T-antigen (Gal-beta(1-3)-GalNAc-alpha-o-Me) complex · MGC C1 · binds GLY1, PHE47, TYR78, VAL80, GLY121, TYR122, TRP123, ASP125
  • 1UH0 · Crystal structure of jacalin- Me-alpha-GalNAc complex · MGC A1200 · binds GLY1, PHE47, TYR78, VAL80, GLY121, TYR122, TRP123, ASP125
  • 1UH1 · Crystal structure of jacalin- GalNAc-beta(1-3)-Gal-alpha-O-Me complex · MGC A1200 · binds GLY1, PHE47, TYR78, VAL80, GLY121, TYR122, TRP123, ASP125
  • 2DU1 · Crystal Structure of basic winged bean lectin in complex with Methyl-alpha-N-acetyl-D… · MGC A1401 · binds HIS84, ALA86, ASP87, GLY103, GLY104, GLY105, TYR106, PHE126 and 9 more
  • 2DVA · Crystal structure of peanut lectin GAL-BETA-1,3-GALNAC-ALPHA-O-ME (Methyl-T-antigen)… · MGC E1 · binds ASN41, SER211, LEU212, GLY213, GLY214
  • 5A56 · The structure of GH101 from Streptococcus pneumoniae TIGR4 in complex with… · MGC B1 · binds TRP724
  • 1UGX · Crystal structure of jacalin- me-alpha-T-antigen (gal-BETA(1-3)- galnac-alpha-O-me)… · MGC C1 · binds GLY1, PHE47, TYR78, VAL80, GLY121, TYR122, TRP123, ASP125
  • 1UH0 · Crystal structure of jacalin- me-alpha-galnac complex · MGC A1200 · binds GLY1, PHE47, TYR78, VAL80, GLY121, TYR122, TRP123, ASP125
  • 1UH1 · Crystal structure of jacalin- galnac-BETA(1-3)-gal-alpha-O-me complex · MGC A1200 · binds GLY1, PHE47, TYR78, VAL80, GLY121, TYR122, TRP123, ASP125
  • 2DU1 · Crystal structure of basic winged bean lectin in complex with methyl- alpha-N-acetyl-D… · MGC A1401 · binds HIS84, ALA86, ASP87, GLY103, GLY104, GLY105, TYR106, PHE126 and 9 more
  • 2DVA · Crystal structure of peanut lectin gal-beta-1,3-galnac-alpha-O-me (methyl-T-antigen)… · MGC E1 · binds ASN41, SER211, LEU212, GLY213, GLY214
  • 5A56 · The structure of GH101 from streptococcus pneumoniae TIGR4 in complex with… · MGC B1 · binds TRP724

Residues it binds most

GLY 28, TYR 20, ASP 20, TRP 22, PHE 20, ALA 8, ASN 16, SER 16, VAL 12, GLN 8 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • MN · Manganese (II) ion
  • GAL · beta-D-galactopyranose
  • AMG · methyl alpha-D-galactopyranoside
  • FUC · alpha-L-fucopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • NGA · 2-acetamido-2-deoxy-beta-D-galactopyranose
  • SO4 · Sulfate ion
  • CIT · Citric acid
  • EDO · 1,2-ethanediol

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