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Ligand · CIT

CIT · Citric acid

CIT, Citric acid (C6 H8 O7, 192.1 g/mol), in the MolNFT structures on GenesisL1: bound in 959 records (681 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
CIT
Formula
C6 H8 O7
Class
additive
Structures
959
PDB entries
681

Binding sites

CIT in 959 structures; the first of them:

  • 4XFR · Crystal structure of a domain of unknown function (DUF1537) from Bordetella… · CIT A501 · binds ASP12, THR14, GLY15, ARG59, LYS88, VAL89, ASP90, SER91 and 3 more
  • 4XTM · Crystal structure of a recombinant Vatairea macrocarpa seed lectin complexed with GalNAc · CIT A304 · binds SER83, LYS84, THR85, THR126, PHE127, SER128, SER134, ALA135 and 2 more
  • 4XTP · Crystal structure of a recombinant Vatairea macrocarpa seed lectin complexed with Tn… · CIT A303 · binds SER83, LYS84, THR85, THR126, PHE127, SER128, SER134, ALA135 and 2 more
  • 4XUZ · Structure of CTX-M-15 bound to RPX-7009 at 1.5 A · CIT A302 · binds LYS73, SER75
  • 4ZBL · Phototoxic fluorescent protein mKillerOrange · CIT A301 · binds VAL30, ALA31, ASP32, HIS45, ALA46, VAL47, ARG211, HIS213
  • 4ZJB · Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(FabZ) in complex… · CIT B501 · binds PRO26, MET27, VAL54, LEU69, PRO26, MET27, LEU29, VAL54 and 1 more
  • 4ZM1 · Shigella flexneri lipopolysaccharide O-antigen chain-length regulator WzzBSF - wild type · CIT A301 · binds ASN24, ASN28, ALA35, PRO36, LYS37, VAL38
  • 4ZVE · Crystal structure of GGDEF domain of the E. coli DosC - form I (apo-form) · CIT A501 · binds ASP333, ASP335, LYS336, PHE337, LYS338, GLU339, ASP376, ARG450
  • 5A57 · The structure of GH101 from Streptococcus pneumoniae TIGR4 in complex with PUGT · CIT A2431 · binds SER1127, ASN1128, GLY1200, ASP1201, GLU1202
  • 5A5A · The structure of GH101 E796Q mutant from Streptococcus pneumoniae TIGR4 in complex with… · CIT A2431 · binds TYR1154, THR1162, ARG1163, ARG1164, GLY1251, VAL1252
  • 5BO8 · Structure of human sialyltransferase ST8SiaIII · CIT B410 · binds ARG331
  • 5CIK · Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition · CIT A401 · binds PRO233, HIS234, HIS327, ARG328, GLY330, HIS331, HIS338, GLU360 and 4 more
  • 5CLJ · Structure of PurE (N5-carboxyaminoimidazole ribonucleotide mutase) H59N from the… · CIT B200 · binds GLY29, SER30, ASP33, VAL56, SER57, ALA58, ASN59, ARG60 and 6 more
  • 5CLS · Structure of human methionine aminopeptidase-2 complexed with spiroepoxytriazole… · CIT A507 · binds HIS391, PRO393, LYS400
  • 5COL · Ribosomal protein L11 from methanococcus jannaschii · CIT B203 · binds LYS2, VAL4, GLU6, LYS53
  • 5CUY · Crystal structure of Trypanosoma brucei Vacuolar Soluble Pyrophosphatases in apo form · CIT A901 · binds ARG213, LYS215, THR219, PRO220, MET221, ASN222, ARG223, LYS314 and 1 more
  • 5CVT · Structure of a single tryptophan mutant of Acetobacter aceti PurE containing… · CIT A201 · binds GLY29, SER30, SER32, ASP33, VAL56, SER57, ALA58, HIS59 and 7 more
  • 5D77 · Structure of Mip6 RRM3 Domain · CIT A401 · binds LYS318, LYS374, TRP383
  • 5DB5 · Crystal structure of PLP-bound E. coli SufS (cysteine persulfide intermediate) in space… · CIT B503 · binds VAL54, HIS55, THR278, ALA30, ALA31, HIS123, ASN175, HIS225 and 5 more
  • 5DHU · Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a novel… · CIT B301 · binds HIS205, VAL98, TYR100, HIS173, SER175, PHE251, PRO252, PHE253 and 1 more
  • 5DQN · Polyethylene 600-bound form of P450 CYP125A3 mutant from Myobacterium Smegmatis - W83Y · CIT A504 · binds ASP93, LEU94, ARG96, ALA97
  • 5DWK · Diacylglycerol Kinase solved by multi crystal multi orientation native SAD · CIT C206 · binds GLU76
  • 5E2N · Crystal structure of human carbonic anhydrase isozyme XIII with… · CIT B302 · binds GLY100, SER101, ALA102, HIS105, SER245, HIS247
  • 5E8E · Crystal structure of thrombin bound to an exosite 1-specific IgA Fab · CIT H608 · binds HIS407, PRO408, ARG409, LYS568, TRP569
  • 5EFI · Crystal structure of mouse CD1d in complex with the p99p lipopeptide · CIT A310 · binds CYS12, LEU13, GLN14, THR26, SER28, VAL30, TRP40, PHE70 and 2 more
  • 5EJH · Crystal structure of NAD kinase V98S mutant from Listeria monocytogenes · CIT A302 · binds TYR100, HIS173, PHE251, PRO252, PHE253, ARG256
  • 5EJI · Crystal structure of NAD kinase W78F mutant from Listeria monocytogenes in complex with… · CIT A304 · binds VAL98, TYR100, HIS173, PRO174, ARG247, PHE251, PRO252, PHE253
  • 5EOG · Structure of full-length human MAB21L1 · CIT A401 · binds TYR10, HIS11, LYS14, LYS354, GLU357, LYS340, TRP343, ARG344 and 1 more

Residues it binds most

ARG 1262, HIS 965, SER 837, GLY 737, THR 838, LYS 812, ASN 724, PRO 395, TYR 600, ALA 597 (residue and the binding sites it lines).

Found with

  • GOL · Glycerol
  • EDO · 1,2-ethanediol
  • NA · Sodium ion
  • ZN · Zinc ion
  • SO4 · Sulfate ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • PEG · Di(hydroxyethyl)ether
  • CL · Chloride ion
  • MG · Magnesium ion
  • GLC · alpha-D-glucopyranose
  • ACT · Acetate ion
  • NAP · Nadp nicotinamide-adenine-dinucleotide phosphate

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