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Ligand · GYP

GYP · methyl alpha-D-glucopyranoside

GYP, methyl alpha-D-glucopyranoside (C7 H14 O6, 194.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
GYP
Formula
C7 H14 O6
Class
ligand
Structures
4
PDB entries
3

Binding sites

GYP in 4 structures; the first of them:

  • 7VL1 · The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with… · GYP A801 · binds LEU100, GLU176, VAL179, TRP182, LEU183, PRO277, GLY278, TRP279 and 4 more
  • 7YNJ · Structure of human SGLT2-MAP17 complex bound with substrate AMG in the occluded… · GYP A701 · binds ASN75, HIS80, PHE98, GLU99, ALA102, THR153, LEU283, VAL286 and 8 more
  • 6XAQ · Alpha-methyl-glucose-bound structure of marinomonas primoryensis PA14… · GYP A307 · binds ASP110, ASP111, GLN129, SER130, GLN156, GLY157, GLY158, ASP159
  • 7VL1 · The complex structure of beta-1,2-glucosyltransferase from ignavibacterium album with… · GYP A801 · binds LEU100, GLU176, VAL179, TRP182, LEU183, PRO277, GLY278, TRP279 and 4 more

Residues it binds most

TRP 3, ASP 3, ILE 3, LEU 3, GLY 3, GLN 2, GLU 3, SER 2, VAL 3, ARG 2 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion

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