MolNFT v2 · #206425 · protein + RNA
Human mitochondrial small subunit assembly intermediate (State E)
8CST: “Human mitochondrial small subunit assembly intermediate (State E)”. Electron microscopy at 2.85, 8 ligands (FES, SF4, NAD). MolNFT v2 #206425 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8CST
- Type
- protein + RNA
- Length
- 6,699 residues
- Chains
- 32
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.85
- Source
- Homo sapiens
- UniProt
- P82930, P82673, Q9NWT8, Q96EY7, Q8N0V3, Q9H7H0, Q9Y399, Q96EL2, P82675, P82932, Q9Y2R9, P82933, P82664, P82912, O15235, O60783, P82914, Q9Y3D3, Q9Y2R5, Q9Y676, Q9Y3D5, P82921, P82650, Q9Y3D9, P82663, Q9BYN8, Q92552, Q9Y2Q9, P51398, Q92665, Q9Y291
- Ligands
- FES, SF4, NAD, ATP, GDP, MG, K, ZN
Structure
electron microscopy · resolution 2.85 · 32 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 0 | — | protein | 211 | — | P82930 |
| 1 | — | protein | 259 | — | P82673 |
| 3 | — | protein | 70 | — | Q9NWT8 |
| 4 | — | protein | 566 | — | Q96EY7 |
| 6 | — | protein | 126 | — | Q8N0V3 |
| 7 | — | protein | 401 | — | Q9H7H0 |
| A | — | rna | 888 | — | — |
| B | — | protein | 220 | — | Q9Y399 |
| C | — | protein | 126 | — | Q96EL2 |
| D | — | protein | 232 | — | P82675 |
| E | — | protein | 108 | — | P82932 |
| F | — | protein | 206 | — | Q9Y2R9 |
| G | — | protein | 292 | — | P82933 |
| H | — | protein | 130 | — | P82664 |
| I | — | protein | 137 | — | P82912 |
| J | — | protein | 107 | — | O15235 |
| K | — | protein | 100 | — | O60783 |
| L | — | protein | 161 | — | P82914 |
| M | — | protein | 115 | — | Q9Y3D3 |
| N | — | protein | 109 | — | Q9Y2R5 |
| O | — | protein | 190 | — | Q9Y676 |
| P | — | protein | 96 | — | Q9Y3D5 |
| Q | — | protein | 86 | — | P82921 |
| R | — | protein | 291 | — | P82650 |
| S | — | protein | 133 | — | Q9Y3D9 |
| T | — | protein | 164 | — | P82663 |
| U | — | protein | 174 | — | Q9BYN8 |
| V | — | protein | 359 | — | Q92552 |
| W | — | protein | 98 | — | Q9Y2Q9 |
| X | — | protein | 352 | — | P51398 |
| Y | — | protein | 123 | — | Q92665 |
| Z | — | protein | 69 | — | Q9Y291 |
Ligands and binding sites
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains E, P, M, T
- SF4 · Iron/sulfur cluster · ligand · chains 7
- NAD · Nicotinamide-adenine-dinucleotide · ligand · chains A, J, L
- ATP · Adenosine-5'-triphosphate · ligand · chains X
- GDP · Guanosine-5'-diphosphate · ligand · chains X
- MG · Magnesium ion · metal · 30 copies · chains A, B, W, X
- K · Potassium ion · metal · 4 copies · chains A
- ZN · Zinc ion · metal · chains O
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- Q96EY7 · AlphaFold monomer V2.0 prediction for pentatricopeptide repeat domain-containing protein… · a predicted model of the same protein · chain 4 against A, TM-score 0.99
- P82650 · AlphaFold monomer V2.0 prediction for 28S ribosomal protein S22, mitochondrial (P82650) · a predicted model of the same protein · chain R against A, TM-score 0.99
- Q9Y2R5 · AlphaFold monomer V2.0 prediction for 28S ribosomal protein S17, mitochondrial (Q9Y2R5) · a predicted model of the same protein · chain N against A, TM-score 0.97
- Q9H7H0 · AlphaFold monomer V2.0 prediction for methyltransferase-like protein 17, mitochondrial… · a predicted model of the same protein · chain 7 against A, TM-score 0.96
- Q9NWT8 · AlphaFold monomer V2.0 prediction for aurora kinase a-interacting protein (Q9NWT8) · a predicted model of the same protein · chain 3 against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P82930
- Every structure of UniProt P82673
- Every structure of UniProt Q9NWT8
- Every structure of UniProt Q96EY7
- Every structure of UniProt Q8N0V3
- Every structure of UniProt Q9H7H0
- Every structure of UniProt Q9Y399
- Every structure of UniProt Q96EL2
- Every structure of UniProt P82675
- Every structure of UniProt P82932
- Every structure of UniProt Q9Y2R9
- Every structure of UniProt P82933
- Every structure of UniProt P82664
- Every structure of UniProt P82912
- Every structure of UniProt O15235
- Every structure of UniProt O60783
- Every structure of UniProt P82914
- Every structure of UniProt Q9Y3D3
- Every structure of UniProt Q9Y2R5
- Every structure of UniProt Q9Y676
- Every structure of UniProt Q9Y3D5
- Every structure of UniProt P82921
- Every structure of UniProt P82650
- Every structure of UniProt Q9Y3D9
- Every structure of UniProt P82663
- Every structure of UniProt Q9BYN8
- Every structure of UniProt Q92552
- Every structure of UniProt Q9Y2Q9
- Every structure of UniProt P51398
- Every structure of UniProt Q92665
- Every structure of UniProt Q9Y291
- Elsewhere: RCSB PDB 8CST · PDBe 8CST · UniProt P82930 · UniProt P82673 · UniProt Q9NWT8 · UniProt Q96EY7 · UniProt Q8N0V3 · UniProt Q9H7H0 · UniProt Q9Y399 · UniProt Q96EL2 · UniProt P82675 · UniProt P82932 · UniProt Q9Y2R9 · UniProt P82933 · UniProt P82664 · UniProt P82912 · UniProt O15235 · UniProt O60783 · UniProt P82914 · UniProt Q9Y3D3 · UniProt Q9Y2R5 · UniProt Q9Y676 · UniProt Q9Y3D5 · UniProt P82921 · UniProt P82650 · UniProt Q9Y3D9 · UniProt P82663 · UniProt Q9BYN8 · UniProt Q92552 · UniProt Q9Y2Q9 · UniProt P51398 · UniProt Q92665 · UniProt Q9Y291
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.