MolNFT v2 · #159125 · protein
B2V2R-Gs protein subcomplex of a GPCR-G protein-beta-arrestin mega-complex
6NI3: “B2V2R-Gs protein subcomplex of a GPCR-G protein-beta-arrestin mega-complex”. Electron microscopy at 3.8, 1 ligand (P0G). MolNFT v2 #159125 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6NI3
- Type
- protein
- Length
- 1,043 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.8
- Source
- Enterobacteria phage RB59; Homo sapiens; Lama glama
- UniProt
- P63092, P62873, P59768, A0A097J809, P07550
- Ligands
- P0G
Structure
electron microscopy · resolution 3.8 · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 234 | — | P63092 |
| B | — | protein | 339 | — | P62873 |
| G | — | protein | 58 | — | P59768 |
| R | — | protein | 284 | — | A0A097J809, P07550 |
| N | — | protein | 128 | — | — |
Ligands and binding sites
- P0G · 8-[(1R)-2-{[1,1-dimethyl-2-(2-methylphenyl) ethyl]amino}-1-hydroxyethyl]-5-hydroxy-2H-1,4-benzoxazin-3(4H)-one · ligand · chains R
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6NI3 · B2V2R-gs protein subcomplex of a GPCR-G protein-beta-arrestin mega- complex · the same entry in another collection · chain R against R, TM-score 1.00
- P62873 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(T)… · a predicted model of the same protein · chain B against A, TM-score 0.99
- P07550 · AlphaFold monomer V2.0 prediction for beta-2 adrenergic receptor (P07550) · a predicted model of the same protein · chain R against A, TM-score 0.93
- P59768 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(O)… · a predicted model of the same protein · chain G against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P63092
- Every structure of UniProt P62873
- Every structure of UniProt P59768
- Every structure of UniProt A0A097J809
- Every structure of UniProt P07550
- Elsewhere: RCSB PDB 6NI3 · PDBe 6NI3 · UniProt P63092 · UniProt P62873 · UniProt P59768 · UniProt A0A097J809 · UniProt P07550
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