MolNFT v2 · #152851 · protein
Respiratory complex I from Thermus thermophilus with bound Decyl-Ubiqui
6I0D: “Respiratory complex I from Thermus thermophilus with bound Decyl-Ubiqui”. X-ray diffraction at 3.6, 4 ligands (SF4, FES, FMN). MolNFT v2 #152851 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6I0D
- Type
- protein
- Length
- 9,550 residues
- Chains
- 32
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.6
- Source
- Thermus thermophilus HB8
- UniProt
- Q56222, Q56221, Q56223, Q56220, Q56219, Q56218, Q56224, Q5SKZ7, Q5SI52, Q56217, Q56225, Q56226, Q56227, Q56228, Q56229, Q60019
- Ligands
- SF4, FES, FMN, DCQ
Structure
x-ray diffraction · resolution 3.6 · 16 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1, B | — | protein | 437 | — | Q56222 |
| 2, C | — | protein | 178 | — | Q56221 |
| 3, D | — | protein | 756 | — | Q56223 |
| 4, E | — | protein | 384 | — | Q56220 |
| 5, F | — | protein | 196 | — | Q56219 |
| 6, G | — | protein | 166 | — | Q56218 |
| 9, O | — | protein | 180 | — | Q56224 |
| 7, I | — | protein | 127 | — | Q5SKZ7 |
| W, X | — | protein | 127 | — | Q5SI52 |
| A, P | — | protein | 117 | — | Q56217 |
| J, R | — | protein | 160 | — | Q56225 |
| K, S | — | protein | 95 | — | Q56226 |
| L, T | — | protein | 605 | — | Q56227 |
| M, U | — | protein | 467 | — | Q56228 |
| N, V | — | protein | 427 | — | Q56229 |
| H, Q | — | protein | 353 | — | Q60019 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 14 copies · chains 1, 3, 4, 6, 9, B, D, E, G, O
- FES · Fe2/s2 (inorganic) cluster · ligand · 4 copies · chains 2, 3, C, D
- FMN · Flavin mononucleotide · ligand · 2 copies · chains 1, B
- DCQ · 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione · ligand · 2 copies · chains 4, 6, E, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6I0D · Respiratory complex I from thermus thermophilus with bound decyl- ubiquinone · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q56222
- Every structure of UniProt Q56221
- Every structure of UniProt Q56223
- Every structure of UniProt Q56220
- Every structure of UniProt Q56219
- Every structure of UniProt Q56218
- Every structure of UniProt Q56224
- Every structure of UniProt Q5SKZ7
- Every structure of UniProt Q5SI52
- Every structure of UniProt Q56217
- Every structure of UniProt Q56225
- Every structure of UniProt Q56226
- Every structure of UniProt Q56227
- Every structure of UniProt Q56228
- Every structure of UniProt Q56229
- Every structure of UniProt Q60019
- Elsewhere: RCSB PDB 6I0D · PDBe 6I0D · UniProt Q56222 · UniProt Q56221 · UniProt Q56223 · UniProt Q56220 · UniProt Q56219 · UniProt Q56218 · UniProt Q56224 · UniProt Q5SKZ7 · UniProt Q5SI52 · UniProt Q56217 · UniProt Q56225 · UniProt Q56226 · UniProt Q56227 · UniProt Q56228 · UniProt Q56229 · UniProt Q60019
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