MolNFT v2 · #145761 · protein + DNA + RNA
CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH
6C6S: “CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH”. Electron microscopy at 3.7, 2 ligands (ZN, MG). MolNFT v2 #145761 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6C6S
- Type
- protein + DNA + RNA
- Length
- 3,428 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.7
- Source
- Escherichia coli; Escherichia coli (strain K12); SYNTHETIC CONSTRUCT
- UniProt
- P0A7Z4, P0A8V2, P0A8T7, P0A800, P0AFW0
- Ligands
- ZN, MG
Structure
electron microscopy · resolution 3.7 · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | dna | 29 | — | — |
| B | — | dna | 29 | — | — |
| R | — | rna | 10 | — | — |
| G | — | protein | 221 | — | P0A7Z4 |
| H | — | protein | 219 | — | P0A7Z4 |
| I | — | protein | 1341 | — | P0A8V2 |
| J | — | protein | 1335 | — | P0A8T7 |
| K | — | protein | 83 | — | P0A800 |
| D | — | protein | 161 | — | P0AFW0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6C6S · Cryoem structure of E.COLI RNA polymerase elongation complex bound with rfah · the same entry in another collection · chain R against R, TM-score 1.00
- P0A8V2 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta (P0A8V2) · a predicted model of the same protein · chain I against A, TM-score 0.98
- P0A8T7 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta' (P0A8T7) · a predicted model of the same protein · chain J against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A7Z4
- Every structure of UniProt P0A8V2
- Every structure of UniProt P0A8T7
- Every structure of UniProt P0A800
- Every structure of UniProt P0AFW0
- Elsewhere: RCSB PDB 6C6S · PDBe 6C6S · UniProt P0A7Z4 · UniProt P0A8V2 · UniProt P0A8T7 · UniProt P0A800 · UniProt P0AFW0
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